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Table 5 Identified genes, their UniProt accession IDs and the number of corresponding contigs for the Amazon molly ( P. formosa; Pofo ) and the Atlantic molly ( P. mexicana; Pome )

From: Comparative analysis of the gonadal transcriptomes of the all-female species Poecilia formosa and its maternal ancestor Poecilia mexicana

Gene name Description UniProt accession ID Number of contigs
    Pofo Pome
Ago1 Argonaute 1, Eukaryotic translation initiation factor 2C 1 Q8CJG1 1 7
Ago2 Argonaute 2, Eukaryotic translation initiation factor 2C 2 Q8CJG0 10 2
Ago3 Argonaute 3, Eukaryotic translation initiation factor 2C 3 Q9H9G7 8 9
Ago4 Argonaute 4, Eukaryotic translation initiation factor 2C 4 Q9HCK5 9 0
C15orf60 Meiotic recombination protein REC114-like Q7Z4M0 0 2
CcnA1 Cyclin-A1 Q92161 13 7
CcnA2 Cyclin-A2 P30274 20 8
CcnC Cyclin-C Q28F72 8 3
Cdk1 Cell division protein kinase/Cyclin-dependent kinase 1 Q9DG98 3 3
Cdk2 Cell division protein kinase/Cyclin-dependent kinase 2 P43450 1 1
Cdk4 Cyclin-dependent kinase 4 Q91727 9 4
Cdk7 Cyclin-dependent kinase 7 P51953 18 2
Cdk10 Cell division protein kinase/Cyclin-dependent kinase 10 Q2TBL8 1 1
Cdk14 Cell division protein kinase/Cyclin-dependent kinase 14 B0VXL7 3 0
Cdk16 Cell division protein kinase/Cyclin-dependent kinase 16 Q00536 3 0
Mcm2 DNA helicase MCM2, Minichromosome maintenance protein 2 Q6DIH3 10 1
Mcm3 DNA helicase MCM3, Minichromosome maintenance protein 3 Q5ZMN2 1 3
Mcm4 DNA helicase MCM4, Minichromosome maintenance protein 4 P33991 0 2
Mcm4B DNA replication licensing factor MCM4-B, Minichromosome maintenance protein 4-B P30664 3 3
Mcm5 DNA helicase MCM5, Minichromosome maintenance 5 Q561P5 18 2
Mcm6 DNA helicase MCM6, Minichromosome maintenance 6 Q14566 3 4
Mcm7 DNA helicase MCM7, Minichromosome maintenance 7 Q6NX31 18 3
Mcm8 DNA helicase MCM8, Minichromosome maintenance 8 Q9UJA3 15 2
Mcm9 DNA helicase MCM9, Minichromosome maintenance 9 Q6NRM6 19 1
Zmcm3 Zygotic minichromosome maintenance protein 3 Q7ZXZ0 0 4
Mei1* Meiosis inhibitor protein 1 Q5TIA1 11 11
Mlh1* DNA mismatch repair protein Mlh1, MutL protein homolog 1 P40692 7 4
Mlh3* DNA mismatch repair protein Mlh3, MutL protein homolog 3 Q9UHC1 6 1
Mnd1* Meiotic nuclear division protein 1 homolog Q32L19 11 3
Mns1* Meiosis-specific nuclear structural protein 1 Q6PBA8 1 2
Mre11 Double-strand break repair protein MRE11 Q9W6K1 2 1
Msh2* DNA mismatch repair protein Msh2, MutS protein homolog 2 Q5XXB5 10 6
Msh3* DNA mismatch repair protein Msh3, MutS protein homolog 3 P20585 8 4
Msh4* DNA mismatch repair protein Msh4, MutS protein homolog 4 O15457 7 4
Msh5* DNA mismatch repair protein Msh5, MutS protein homolog 5 O43196 0 4
Msh6* DNA mismatch repair protein Msh6, MutS protein homolog 6 P52701 26 6
Piwil1 Piwi-like protein 1 Q8UVX0 13 6
Piwil2 Piwi-like protein 2 A6P7L8 7 2
Pms2 DNA mismatch repair protein (endonuclease) PMS2 P54278 12 1
Psmc3ip* Homologous-pairing protein 2 homolog (HOP2) Q63ZL2 3 2
Rad1 Cell cycle checkpoint protein RAD1 Q5R7X9 4 0
Rad21* Double-strand-break repair protein rad21 homolog O60216 9 12
Rad50 DNA repair protein RAD50 P70388 2 2
Rad51B* DNA repair protein RAD51 homolog B Q91917 23 3
Rad51C* DNA repair protein RAD51 homolog 3 O43502 7 1
Rad51D* DNA repair protein RAD51 homolog 4/D O75771 7 5
Rad52 DNA repair protein RAD52 homolog P39022 10 11
Rad54A* DNA repair and recombination protein RAD54-like Q92698 18 6
Rad54B* DNA repair and recombination protein RAD54B Q9DG67 9 1
Rad9A Cell cycle checkpoint control protein RAD9A Q99638 8 3
Rad9B Cell cycle checkpoint control protein RAD9B Q6WBX8 0 1
Rec8* Meiotic recombination protein REC8 homolog O95072 3 2
RecQl1 ATP-dependent DNA helicase Q1 Q9Z129 3 3
RecQl4 ATP-dependent DNA helicase Q4 O94761 3 6
RecQl5 ATP-dependent DNA helicase Q5 O94762 5 2
Rmi1 RecQ-mediated genome instability protein 1 A4IF98 15 1
Rmi2 RecQ-mediated genome instability protein 2 Q5ZM20 0 2
Sfr1* Swi5-dependent recombination DNA repair protein 1 homolog, Meiosis protein 5 homolog B7ZD04 2 1
Smarca2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 Q6DIC0 11 0
Smarca4 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 A7Z019 10 0
Smc1a* Structural maintenance of chromosomes protein 1A Q9CU62 10 2
Smc1b* Structural maintenance of chromosomes protein 1B Q8NDV3 2 2
Smc2* Structural maintenance of chromosomes protein 2 P50533 9 2
Smc3* Structural maintenance of chromosomes protein 3 Q9CW03 2 3
Smc4* Structural maintenance of chromosomes protein 4 P50532 7 8
Smc5* Structural maintenance of chromosomes protein 5 Q802R9 4 1
Smc6* Structural maintenance of chromosomes protein 6 Q6P9I7 24 3
Smchd1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 A6NHR9 25 37
Spo11* Meiotic recombination protein Q9Y5K1 4 11
Stag1* Cohesin subunit SA-1 Q8WVM7 3 13
Stag2* Cohesin subunit SA-2 Q8N3U4 7 14
Xrcc1 DNA repair protein XRCC1 Q60596 21 3
Xrcc2* DNA repair protein XRCC2 Q9CX47 19 12
Xrcc3* DNA repair protein XRCC3 Q08DH8 2 0
Xrcc4 DNA repair protein XRCC4 Q924T3 24 6
  1. *Genes that are specific for meiosis[3437].