|
TRIM family
|
No. of TRIM members in B. rapa (283 Mb) genome
|
No. of TRIM members in B. oleracea (385 Mb) genome
|
Copies in A. thaliana (119 Mb)
|
|---|
|
Total
|
Intergenic spacea
|
Near geneb
|
Elements in genic regions
|
Un mappedd
|
Total
|
Intergenic spacea
|
Near geneb
|
Elements in genic regions
|
|---|
|
5’ UTRc
|
CDS
|
Intron
|
3’ UTRc
|
5’ UTRc
|
CDS
|
Intron
|
3’ UTRc
|
|---|
|
TB-1
|
206
|
71
|
54
|
12
|
1
|
39
|
17
|
12
|
273
|
164
|
61
|
17
|
0
|
19
|
12
|
65
|
|
TB-2
|
319
|
147
|
92
|
15
|
2
|
35
|
18
|
10
|
321
|
162
|
110
|
11
|
0
|
29
|
9
|
16
|
|
TB-3
|
52
|
22
|
7
|
4
|
3
|
8
|
4
|
4
|
51
|
25
|
15
|
3
|
1
|
3
|
4
|
0
|
|
TB-4
|
351
|
157
|
78
|
14
|
7
|
37
|
14
|
44
|
392
|
235
|
106
|
19
|
2
|
16
|
14
|
0
|
|
TB-5
|
465
|
233
|
96
|
8
|
1
|
40
|
13
|
74
|
602
|
397
|
150
|
21
|
0
|
13
|
21
|
96
|
|
Total
|
1393
|
630
|
327
|
53
|
14
|
159
|
66
|
144
|
1639
|
983
|
442
|
71
|
3
|
80
|
60
|
177
|
- aMITE members categorized by their insertion >2 kb from the nearest gene.
- bMITE members categorized by their insertion 500-2000 bp from the nearest gene.
- cMITE members residing in the 500 bp upstream (5’UTR) or downstream (3’UTR) of the start or stop codon, respectively.
- dMITE members found in unanchored scaffolds of the B. rapa genome.
