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Table 1 Characteristics of five TRIM families in the B . rapa and B . oleracea genomes

From: BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species

TRIM family No. of TRIM members in B. rapa (283 Mb) genome No. of TRIM members in B. oleracea (385 Mb) genome Copies in A. thaliana (119 Mb)
Total Intergenic spacea Near geneb Elements in genic regions Un mappedd Total Intergenic spacea Near geneb Elements in genic regions
5’ UTRc CDS Intron 3’ UTRc 5’ UTRc CDS Intron 3’ UTRc
TB-1 206 71 54 12 1 39 17 12 273 164 61 17 0 19 12 65
TB-2 319 147 92 15 2 35 18 10 321 162 110 11 0 29 9 16
TB-3 52 22 7 4 3 8 4 4 51 25 15 3 1 3 4 0
TB-4 351 157 78 14 7 37 14 44 392 235 106 19 2 16 14 0
TB-5 465 233 96 8 1 40 13 74 602 397 150 21 0 13 21 96
Total 1393 630 327 53 14 159 66 144 1639 983 442 71 3 80 60 177
  1. aMITE members categorized by their insertion >2 kb from the nearest gene.
  2. bMITE members categorized by their insertion 500-2000 bp from the nearest gene.
  3. cMITE members residing in the 500 bp upstream (5’UTR) or downstream (3’UTR) of the start or stop codon, respectively.
  4. dMITE members found in unanchored scaffolds of the B. rapa genome.