Table 3 Search output produced by searching E. coli flagellin MS sequence data against a curated E. coli flagellin database (CD) alone and in conjunction with the public database, Swissprot
Strain number | Confirmed serotype | MS-H type | Mascot score | Sequence identified | Sequence coverage (%) | |||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | CD only | CD and Swissprot | CD only | CD and Swissprot | CD only | CD and Swissprot |
E169 | H1 | H1 | 14607 | 10922 | 57(55)¶ | 57(49) | 98 | 98 |
E170 | H2 | H2 | 1754 | 1113 | 37(34) | 37(27) | 80 | 80 |
E171 | H3 | H3 | 8117 | 5735 | 52(46) | 50(39) | 91 | 90 |
E172 | H4 | H4 | 3894 | 2893 | 28(26) | 28(21) | 89 | 89 |
E173 | H5 | H5 | 1568 | 1167 | 26(23) | 24(16) | 81 | 74 |
E174 | H6 | H6 | 6123 | 4513 | 46(44) | 46(38) | 90 | 90 |
EDL933 | H7 | H7 | 6131 | 4511 | 56(54) | 55(48) | 90 | 90 |
E176 | H8 | H8 | 5538 | 3916 | 44(43) | 43(39) | 90 | 89 |
E177 | H9 | H9 | 10426 | 8099 | 53(51) | 52(47) | 80 | 80 |
E659 | H10 | H10 | 7281 | 5042 | 47(47) | 47(41) | 98 | 98 |
902380 | H7 | H7 | 3421 | 2515 | 43(40) | 42(35) | 84 | 82 |
050958 | H7 | H7 | 2656 | 1999 | 38(36) | 38(31) | 78 | 78 |
090414 | H7 | H7 | 5223 | 3943 | 46(44) | 45(42) | 94 | 94 |
091349 | H7 | H7 | 5887 | 4459 | 52(49) | 52(46) | 94 | 94 |
091350 | H7 | H7 | 3404 | 2522 | 44(42) | 43(37) | 89 | 88 |