Table 4 Ramchandran analysis for the validation of SG2NA proteins modeled using Procheck and MolProbity tools integrated in the PSVS servers before and after molecular dynamic simulations
Residues | Most favored (%) | Allowed regions (%) | Generously allowed (%) | Disallowed (%) | ||
|---|---|---|---|---|---|---|
m35kDa | Pre-MD | Procheck | 61.6 | 29.8 | 6.2 | 2.5 |
MolProbity | 69.9 | 20.4 | - | 9.7 | ||
Post-MD | Procheck | 74.0 | 22.3 | 2.9 | 0.8 | |
MolProbity | 86.0 | 12.7 | - | 1.3 | ||
m78kDa | Pre-MD | Procheck | 76.6 | 16.9 | 3.8 | 2.7 |
MolProbity | 80.7 | 11.7 | - | 7.6 | ||
Post-MD | Procheck | 73.3 | 20.3 | 4.5 | 2.0 | |
MolProbity | 84.1 | 12.7 | - | 3.2 | ||
m87kDa | Pre-MD | Procheck | 72.1 | 20.5 | 5.0 | 2.4 |
MolProbity | 78.5 | 12.8 | - | 8.7 | ||
Post-MD | Procheck | 74.3 | 21.3 | 2.8 | 1.6 | |
MolProbity | 83.5 | 12.7 | - | 3.8 | ||