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Table 4 Ramchandran analysis for the validation of SG2NA proteins modeled using Procheck and MolProbity tools integrated in the PSVS servers before and after molecular dynamic simulations

From: Molecular modeling and molecular dynamics simulations based structural analysis of the SG2NA protein variants

Residues Most favored (%) Allowed regions (%) Generously allowed (%) Disallowed (%)
m35kDa Pre-MD Procheck 61.6 29.8 6.2 2.5
MolProbity 69.9 20.4 - 9.7
Post-MD Procheck 74.0 22.3 2.9 0.8
MolProbity 86.0 12.7 - 1.3
m78kDa Pre-MD Procheck 76.6 16.9 3.8 2.7
MolProbity 80.7 11.7 - 7.6
Post-MD Procheck 73.3 20.3 4.5 2.0
MolProbity 84.1 12.7 - 3.2
m87kDa Pre-MD Procheck 72.1 20.5 5.0 2.4
MolProbity 78.5 12.8 - 8.7
Post-MD Procheck 74.3 21.3 2.8 1.6
MolProbity 83.5 12.7 - 3.8