DNA analyses of a private collection of microbial green algae contribute to a better understanding of microbial diversity

Hoshina, Ryo

doi:10.1186/1756-0500-7-592

Table 1 Strains sequenced in the study and their taxonomic designation

From: DNA analyses of a private collection of microbial green algae contribute to a better understanding of microbial diversity

Strain	rDNA sequence			Taxonomic designation
Strain	Acc. no.	Coverage	SSU intron*
GB1a	AB917097	SSU–ITS2		Desmodesmus sp.
GB1c	AB917098	SSU–ITS2		‘Ankistrodesmus’ gracilis
GB1d	AB917099	SSU–ITS2		Pectinodesmus sp.
GB1e	AB917100	SSU–ITS2		Acutodesmus obliquus
GB1g	AB917101	SSU–ITS2		Acutodesmus obliquus
GB1h	AB917102	SSU–ITS2		Pectinodesmus sp.
GB1j	AB917103	SSU–5′LSU	516	Pectinodesmus sp.
GB1k	AB917104, -105	SSU–5′LSU		Micractinium sp.
GS2i	AB917106	SSU–ITS2	516, 943, 1512	Desmodesmus brasiliensis
GS2j	AB917107	SSU–ITS2	516	Desmodesmus opoliensis
GS2k	AB917108	3′SSU–ITS2	—	Desmodesmus opoliensis
GS2L	AB917109	SSU–ITS2	516, 943, 1512	Desmodesmus brasiliensis
GS2m	AB917110	SSU–ITS2	516	Desmodesmus opoliensis
GS2n	AB917111	SSU–ITS2	516, 943, 1512	Desmodesmus brasiliensis
GS2o	AB917112	SSU–ITS2		Desmodesmus armatus
GS2p	AB917113	SSU–ITS2		Desmodesmus armatus
GS3a	AB917114	SSU–ITS2		Acutodesmus obliquus
GS3b	AB917115	3′SSU–5′LSU	—	Acutodesmus obliquus
GS3c	AB917116	SSU–ITS2	943	Tetranephris brasiliensis
GS3d	AB917117	3′SSU–5′LSU	—	Acutodesmus obliquus
GS3e	AB917118	SSU–ITS2		Acutodesmus obliquus
GS3f	AB917119	SSU–ITS2	943	Tetranephris brasiliensis
GS3g	AB917120	3′SSU–5′LSU	—	Acutodesmus obliquus
GS3h	AB917121	3′SSU–5′LSU	—	Acutodesmus obliquus
GS3i	AB917122	SSU–ITS2		Acutodesmus obliquus
GS3j	AB917123	3′SSU–ITS2	—	Tetranephris brasiliensis
GS3k	AB917124	3′SSU–5′LSU	—	Acutodesmus obliquus
GS3m	AB917125	SSU–ITS2		Acutodesmus obliquus
GS3n	AB917126	SSU–ITS2		Acutodesmus obliquus
GS3p	AB917127	SSU–ITS2		Acutodesmus obliquus
GM4a	AB917128	SSU–5′LSU		Desmodesmus sp.
GM4b	AB917129	SSU–5′LSU	156, 943, 1046, 1139, 1512	Selenastraceae sp.
GM4c	AB917130	SSU–ITS2	516, 1512	Desmodesmus sp.
GM4d	AB917131	SSU–5′LSU	516, 943, 1046	Nephrochlamys subsolitaria
GM4e	AB917132	SSU–5′LSU	40, 156, 516, 1046, 1139, 1512	Neochloris sp.
GM4f	AB917133	SSU–ITS2		Desmodesmus armatus
GM4g	AB917134	SSU–ITS2	516, 943, 1512	Desmodesmus bicellularis
GM4h	AB917135	SSU–ITS2	516, 943	Desmodesmus armatus
GM4i	AB917136	SSU–5′LSU	516	Desmodesmus sp.
GM4j	AB917137	SSU–5′LSU	516, 1512	Desmodesmus sp.
GM4k	AB917138	SSU–5′LSU		Desmodesmus armatus
GM4n	AB917139	SSU–5′LSU		Desmodesmus pannonicus
GA5a	AB917140	SSU–5′LSU		Coccomyxa sp.

*Insertion position corresponding to Escherichia coli rRNA gene.
Strain names indicate the water source in Germany from which the strain originated. GB1: a pond in the Botanischer Garten, Berlin, July 28, 2011; GS2: an artificial pond in the Mittlerer Schlossgarten, Stuttgart, July 31; GS3: a fountain in the Oberer Schlossgarten, Stuttgart, July 31; GM4: an artificial pond in Denninger Anger Park, Munich, Aug. 1; GA5: Alpsee Lake in the Ostallgäu district of Bavaria, Aug. 2.

Back to article page

ISSN: 1756-0500

Contact us

Submission enquiries: bmcresearchnotes@biomedcentral.com
General enquiries: ORSupport@springernature.com

BMC Research Notes

Contact us