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Table 1 Genomes used in the ten-genomes experiment

From: Estimating overannotation across prokaryotic genomes using BLAST+, UBLAST, LAST and BLAT

Organism (NCBI’s UID) SP hits Genes Gene estimate Overannotation (%)
Streptococcus pneumoniae 670-6B (52533) 1430 2352 1750 34.40
Bacillus cereus ATCC 10987 (57673) 3399 5844 4305 35.75
Bacillus subtilis 168 (57675) 3170 4176 3568 17.04
Escherichia coli K-12 MG1655 (57779) 3670 4145 3936 5.31
Burkholderia pseudomallei 1710b (58391) 3818 6344 5578 13.73
Burkholderia cenocepacia MC0-3 (58769) 4829 7008 5971 17.37
Anaeromyxobacter sp. K (58953) 2623 4457 3837 16.16
Methylobacterium nodulans ORS2060 (59023) 4107 8308 5819 42.77
Coprothermobacter proteolyticus DSM5265 (59253) 1016 1482 1239 19.61
Lactobacillus salivarius CECT5713 (162005) 1176 1552 1485 4.51
Mycobacterium abscessus GO06 (170732) 2443 2626 2580 1.78
  1. Gene estimates and overannotation as calculated with BLAST+ [7].