Table 1 Genomes used in the ten-genomes experiment
From: Estimating overannotation across prokaryotic genomes using BLAST+, UBLAST, LAST and BLAT
Organism (NCBI’s UID) | SP hits | Genes | Gene estimate | Overannotation (%) |
|---|---|---|---|---|
Streptococcus pneumoniae 670-6B (52533) | 1430 | 2352 | 1750 | 34.40 |
Bacillus cereus ATCC 10987 (57673) | 3399 | 5844 | 4305 | 35.75 |
Bacillus subtilis 168 (57675) | 3170 | 4176 | 3568 | 17.04 |
Escherichia coli K-12 MG1655 (57779) | 3670 | 4145 | 3936 | 5.31 |
Burkholderia pseudomallei 1710b (58391) | 3818 | 6344 | 5578 | 13.73 |
Burkholderia cenocepacia MC0-3 (58769) | 4829 | 7008 | 5971 | 17.37 |
Anaeromyxobacter sp. K (58953) | 2623 | 4457 | 3837 | 16.16 |
Methylobacterium nodulans ORS2060 (59023) | 4107 | 8308 | 5819 | 42.77 |
Coprothermobacter proteolyticus DSM5265 (59253) | 1016 | 1482 | 1239 | 19.61 |
Lactobacillus salivarius CECT5713 (162005) | 1176 | 1552 | 1485 | 4.51 |
Mycobacterium abscessus GO06 (170732) | 2443 | 2626 | 2580 | 1.78 |