Table 2 Quality processing of reads from three Hevea tissue libraries
From: RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis
Latex library | Read number (forward + reverse) | Read size (forward + reverse) |
|---|---|---|
Raw reads | 50,384,572 (100%) | 5,038,457,200 (100%) |
Clean reads | 49,393,389 (98.03%) | 4,709,104,798 (93.46%) |
Paired reads | 48,650,932 (96.56%) | 4,647,858,661 (92.25%) |
Orphan reads (single end) | 742,457 (1.47%) | 61,246,137 (1.21%) |
Leaf library | Read number (forward + reverse) | Read size (forward + reverse) |
Raw reads | 49,578,322 (100%) | 4,957,832,200 (100%) |
Clean reads | 47,662,360 (96.14%) | 4,512,413,782 (91.02%) |
Paired reads | 46,062,766 (92.90%) | 4,373,106,379 (88.21%) |
Orphan reads (single end) | 1,599,594 (3.23%) | 139,307,403 (2.81%) |
Bark library | Read number (forward + reverse) | Read size (forward + reverse) |
Raw reads | 169,887,626 (100%) | 16,988,762,600 (100%) |
Clean reads | 166,258,828 (97.86%) | 15,983,753,737 (94.08%) |
Paired reads | 163,316,702 (96.13%) | 15,726,859,825 (92.57%) |
Orphan reads (single end) | 2,942,126 (1.73%) | 256,893,912 (1.51%) |