Table 1 Major methods provided by each component of PCP-ML
From: PCP-ML: Protein characterization package for machine learning
Parsers and encoders | Characterizers | Feature writers and generators |
|---|---|---|
ParseFastaSequences | AthelyFactors | PrintFeatures |
ParseSSProOutput | InterfaceContactPotentials | WriteFeatures |
ParsePSIPredOutput | BetaContactPotentials | Â |
ParseAsciiPSSM | SSComposition | Â |
ParseAnchoredMSA | SAComposition | Â |
ParseDSSPOutput | AAComposition | Â |
HotEncodeAA | Hydrophobicity | Â |
HotEncodeSS | CalculateR | Â |
HotEncodeSA | CalculateCosine | Â |
| Â | ScaledOrderedMean | Â |
| Â | CalculateEntropy | Â |