Table 3 Intra-basepair parameters for W-C basepairs
Base Pair (n) | Buckle | Propeller-twist | Open | Shear | Stretch | Stagger | λ1 | λ2 | C1'-C1' | C6-C8 |
|---|---|---|---|---|---|---|---|---|---|---|
ModelRNA | ||||||||||
AU | -1.5 | -10.5 | -0.2 | 0.0 | 2.9 | -0.1 | 54.4 | 54.4 | 10.7 | 9.9 |
GC | -1.3 | -10.5 | -1.3 | 0.0 | 2.9 | -0.1 | 54.4 | 54.4 | 10.7 | 9.9 |
free-RNA | ||||||||||
AU | -1.5 | -12.7 | 3.6 | 0.1 | 2.8 | 0.0 | 56.0 | 55.8 | 10.5 | 9.8 |
(339) | (5.6) | (5.3) | (3.9) | (0.3) | (0.1) | (0.2) | (2.6) | (3.0) | (0.2) | (0.1) |
GC | -5.1 | -10.9 | 0.9 | -0.1 | 2.9 | 0.0 | 54.2 | 55.3 | 10.6 | 9.9 |
(725) | (6.5) | (6.0) | (3.3) | (0.3) | (0.1) | (0.2) | (2.4) | (2.9) | (0.2) | (0.1) |
bound-RNA | ||||||||||
AU | -2.8 | -9.5 | 3.7 | 0.1 | 2.8 | 0.0 | 56.0 | 55.6 | 10.5 | 9.8 |
(862) | (8.8) | (7.2) | (4.8) | (0.4) | (0.2) | (0.4) | (3.3) | (3.5) | (0.3) | (0.1) |
GC | -6.1 | -8.9 | 0.9 | -0.1 | 2.9 | -0.1 | 54.3 | 55.1 | 10.6 | 9.9 |
(2476) | (8.8) | (7.0) | (3.9) | (0.4) | (0.1) | (0.3) | (3.1) | (3.2) | (0.2) | (0.2) |
ADNA | ||||||||||
AT | -0.3 | -9.7 | 2.8 | 0.0 | 2.8 | -0.1 | 55.1 | 56.5 | 10.4 | 9.8 |
(43) | (6.3) | (5.6) | (4.6) | (0.2) | (0.1) | (0.2) | (4.0) | (3.3) | (0.2) | (0.1) |
GC | -6.6 | -9.4 | -0.2 | -0.1 | 2.9 | -0.1 | 55.2 | 55.1 | 10.6 | 9.8 |
(273) | (7.7) | (6.5) | (2.8) | (0.2) | (0.1) | (0.3) | (2.7) | (2.7) | (0.2) | (0.1) |
BDNA | ||||||||||
AT | -2.1 | -13.7 | 4.2 | 0.1 | 2.8 | -0.1 | 55.5 | 55.7 | 10.5 | 9.8 |
(136) | (7.8) | (5.3) | (4.1) | (0.3) | (0.1) | (0.2) | (3.2) | (3.2) | (0.2) | (0.1) |
GC | 0.1 | -9.2 | -0.7 | -0.1 | 2.9 | 0.0 | 54.7 | 54.5 | 10.7 | 9.9 |
(184) | (9.3) | (7.2) | (3.4) | (0.3) | (0.1) | (0.2) | (2.8) | (2.8) | (0.2) | (0.2) |