Table 6 Dinucleotide step parameters values for YR steps in RNA helices
Step | Dataset (n) | Tilt | Roll | Twist | Shift | Slide | Rise | Prop.av | Cup | Zp |
|---|---|---|---|---|---|---|---|---|---|---|
CA/UG | free-RNA | -0.6 | 11.0 | 31.1 | -0.1 | -1.6 | 3.3 | -11.5 | -5.3 | 2.3 |
| Â | (127) | (1.5) | (3.7) | (2.2) | (0.4) | (0.2) | (0.1) | (3.6) | (7.0) | (0.2) |
| Â | non-cont | -0.1 | 11.4 | 29.9 | 0.0 | -1.7 | 3.3 | -9.2 | -4.5 | 2.2 |
(88) | (2.5) | (4.7) | (2.7) | (0.5) | (0.3) | (0.2) | (5.5) | (11.5) | (0.3) | |
| Â | cont | 0.1 | 10.7 | 30.3 | -0.0 | -1.7 | 3.3 | -9.6 | -4.3 | 2.2 |
(148) | (2.3) | (4.8) | (2.7) | (0.5) | (0.3) | (0.1) | (4.6) | (10.0) | (0.3) | |
CG/CG | free-RNA | -0.2 | 11.5 | 31.0 | -0.2 | -1.8 | 3.3 | -11.2 | -10.7 | 2.3 |
| Â | (84) | (2.0) | (4.3) | (2.7) | (0.5) | (0.3) | (0.1) | (4.0) | (9.2) | (0.3) |
| Â | non-cont | 0.6 | 12.8 | 30.1 | 0.1 | -1.9 | 3.3 | -10.9 | -13.5 | 2.4 |
(89) | (2.4) | (4.4) | (2.6) | (0.5) | (0.3) | (0.1) | (5.0) | (10.7) | (0.3) | |
| Â | cont | 0.1 | 11.0 | 29.7 | 0.0 | -1.9 | 3.3 | -9.4 | -9.1 | 2.4 |
(157) | (2.4) | (4.4) | (3.1) | (0.5) | (0.3) | (0.1) | (4.9) | (9.9) | (0.3) | |
UA/UA | free-RNA | 0.5 | 14.1 | 30.7 | 0.2 | -1.5 | 3.3 | -14.0 | -3.9 | 2.0 |
| Â | (29) | (2.2) | (3.4) | (2.5) | (0.4) | (0.2) | (0.1) | (3.4) | (7.4) | (0.2) |
| Â | non-cont | -0.7 | 12.0 | 30.1 | -0.1 | -1.6 | 3.3 | -11.0 | -6.5 | 2.1 |
(24) | (2.2) | (5.8) | (2.2) | (0.4) | (0.3) | (0.1) | (5.5) | (9.4) | (0.3) | |
| Â | cont | -0.8 | 11.2 | 30.4 | -0.0 | -1.5 | 3.3 | -10.5 | -0.3 | 2.1 |
(27) | (3.1) | (3.9) | (2.2) | (0.4) | (0.2) | (0.2) | (4.0) | (11.5) | (0.2) | |
YR | free-RNA | -0.3 | 11.5 | 31.0 | -0.1 | -1.7 | 3.3 | -11.7 | -7.0 | 2.2 |
| Â | (240) | (1.8) | (4.0) | (2.4) | (0.4) | (0.3) | (0.1) | (3.8) | (8.3) | (0.3) |
| Â | non-cont | 0.1 | 12.1 | 30.0 | 0.0 | -1.8 | 3.3 | -10.2 | -8.7 | 2.3 |
(201) | (2.5) | (4.8) | (2.6) | (0.5) | (0.3) | (0.1) | (5.3) | (11.7) | (0.3) | |
| Â | cont | -0.0 | 10.9 | 30.0 | 0.0 | -1.8 | 3.3 | -9.6 | -6.3 | 2.3 |
(332) | (2.4) | (4.5) | (2.9) | (0.5) | (0.3) | (0.1) | (4.7) | (10.5) | (0.3) | |
ModelRNA | Â | -0.4 | 13.1 | 30.0 | 0.0 | -1.2 | 3.3 | -10.4 | 0.0 | 2.2 |