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Table 2 Analysis of putative rhomboid proteases from nine sequenced Streptomycetes

From: Evolutionary dynamics of rhomboid proteases in Streptomycetes

IMG Gene_OID Species Length (aa)a Family ASb AS distance (aa) aa in TMHc # TMH pfam e value
29607986 S. avermitilis 298 A 249, 203 46 130.58 6 2.50E−34
297158806 S. bingchenggensis 295 A 245, 199 46 132.73 6 2.10E−35
337767090 S. cattleya 282 A 232, 185 47 141.11 7 1.20E−34
259419993 S. coelicolor ( SCO3855 ) 297 A 248, 202 46 138.3 7 3.30E−37
178466026 S. griseus subsp. griseus 208 A 236, 190 46 136.70 7 4.50E−35
374101595 S. hygroscopicus jinggangensis 281 A 232, 186 46 121.77 6 2.60E−36
297193265 S. pristinaespiralis 299 A 249, 203 46 136.04 7 2.90E−37
260648514 S. scabiei 297 A 248, 201 47 135.09 7 1.70E−38
297200957 S. sviceus 294 A 245, 199 46 130.14 7 8.60E−36
29609854 S. avermitilis 321 B 270, 223 47 135.72 7 3.80E−27
24419018 S. coelicolor ( SCO2023 ) 285 B 229, 182 47 139.55 7 9.70E−24
178467794 S. griseus subsp. griseus 303 B 251, 204 47 131.42 6 1.20E–28
260650743 S. scabiei 309 B 258, 211 47 133.61 7 8.40E–26
197711076 S. sviceus 305 B 252, 205 47 138.69 7 1.10E–26
29605874 S. avermitilis 272 C 235, 169 66 128.22 6 1.70E–36
337763630 S. cattleya 266 C 235, 169 66 126.73 6 6.10E–35
21224370 S. coelicolor ( SCO6038 ) 285 C 346, 280 66 132.24 6 2.60E−36
374103480 S. hygroscopicus jinggangensis 274 C 235, 169 66 129.53 6 6.40E–37
260646107 S. scabiei 269 C 232, 166 66 128.35 6 2.50E–38
297203088 S. sviceus 295 C 256, 190 66 127.84 6 2.30E–37
29609721 S. avermitilis 247 D 213, 149 64 130.48 6 7.80E–30
297161230 S. bingchenggensis 237 D 203, 139 64 128.67 6 6.10E–33
337765279 S. cattleya 259 D 226, 162 64 130.11 6 9.10E–33
4539208 S. coelicolor ( SCO2139 ) 256 D 221, 157 64 128.18 6 2.50E−31
178467673 S. griseus subsp. griseus 249 D 217, 153 64 131.13 6 5.30E−34
374100011 S. hygroscopicus jinggangensis 225 D 190, 126 64 127.83 6 4.10E−30
197720707 S. pristinaespiralis 255 D 222, 158 64 128.94 6 3.30E–31
260650624 S. scabiei 251 D 209, 145 64 128.36 6 8.30E–30
297199120 S. sviceus 256 D 221, 157 64 130.03 6 8.10E−30
178466512 S. griseus subsp. griseus 249 E 181, 129 52 122.50 6 5.20E−25
197722368 S. pristinaespiralis 196 E 176, 123 53 125.71 6 6.40E−23
290958287 S. scabiei 223 E 198, 145 53 127.68 6 2.30E−20
197711057 S. sviceus 197 E 175, 122 53 127.02 6 1.20E−21
  1. Bold characters are used to identify S. coelicolor genes.
  2. aAmino acids.
  3. bActive site.
  4. cTransmembrane helix.
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