Table 2 Cross amplification results in 11 additional Rhinolophus species from southern Africa
Taxa | Collection country | n | Loci tested | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
RCA1 | RCA2 | RCA3 | RCA4 | RCA5 | RCA6 | RCA7 | RDE1 | RDE2 | RDE3 | |||
Rhinolophus blasii | Malawi, RSA, Zambia, Zimbabwe | 5 | 2/5 | 5/5 | 5/5 | 6/5 | 3/5 | 7/5 | 4/5 | 6/5 | 6/5 | 6/5 |
500–546 | 488–500 | 402–454 | 364–388 | 200–304 | 254–270 | 214–236 | 376–418 | 379–401 | 298–344 | |||
Rhinolophus clivosus | RSA, Mozambique | 5 | 5/5 | 6/5 | 4/5 | 6/5 | 8/5 | 5/5 | 5/5 | 5/5 | 5/5 | 8/5 |
534–566 | 484–524 | 406–422 | 366–376 | 272–324 | 270–286 | 236–256 | 424–454 | 373–387 | 330–398 | |||
Rhinolophus damarensis | Namibia, RSA | 5 | 4/5 | 7/5 | 5/5 | 6/5 | 7/5 | 6/5 | 4/5 | 4/5 | 6/5 | 7/5 |
528–548 | 494–534 | 406–422 | 376–392 | 268–332 | 262–278 | 232–244 | 398–490 | 379–397 | 298–342 | |||
Rhinolophus darlingi | RSA, Zimbabwe | 5 | 1/3 | 3/5 | 6/5 | 7/5 | 4/5 | 8/5 | 6/5 | 7/5 | 4/5 | 7/5 |
500 | 478–500 | 418–442 | 364–392 | 200–256 | 244–296 | 212–248 | 374–454 | 395–401 | 302–338 | |||
Rhinolophus denti | Botswana, Namibia, RSA | 5 | 4/4 | 4/4 | 4/4 | 2/4 | 6/4 | 3/4 | 3/5 | 4/4 | 5/4 | 4/3 |
512–540 | 510–530 | 406–422 | 370–376 | 258–340 | 242–258 | 228–248 | 386–402 | 391–401 | 312–350 | |||
Rhinolophus fumigatus | Namibia, Zimbabwe | 5 | 5/5 | 5/5 | 6/5 | 4/5 | 8/5 | 6/5 | 5/5 | 7/5 | 5/5 | 4/5 |
536–560 | 478–528 | 414–442 | 368–394 | 228–292 | 302–330 | 220–236 | 438–472 | 374–402 | 302–308 | |||
Rhinolophus hildebrandtii | RSA, Zimbabwe | 5 | 3/5 | 2/5 | 3/5 | 4/5 | 8/5 | 6/5 | 5/5 | 4/5 | 3/5 | 2/5 |
544–552 | 474–480 | 414–432 | 370–376 | 248–284 | 258–296 | 226–240 | 380–398 | 385–391 | 308–312 | |||
Rhinolophus landeri | Zimbabwe | 2 | 4/2 | 2/2 | 2/2 | 2/2 | 2/2 | 4/2 | 4/2 | 1/2 | 2/2 | 4/2 |
536–554 | 464–486 | 424–436 | 362–376 | 238–254 | 266–282 | 224–238 | 376 | 379–391 | 272–306 | |||
Rhinolophus mossambicus | Zambia, Zimbabwe | 4 | 4/3 | 6/3 | 6/3 | 4/4 | 5/3 | 4/4 | 5/3 | 6/3 | 4/3 | 2/3 |
544–556 | 478–520 | 398–430 | 360–366 | 224–242 | 278–292 | 224–240 | 402–446 | 361–391 | 300–304 | |||
Rhinolophus simulator | Botswana, RSA, Zambia, Zimbabwe | 5 | 5/5 | 8/5 | 6/5 | 4/5 | 4/5 | 3/5 | 5/5 | 5/5 | 7/5 | 7/5 |
542–574 | 488–528 | 398–430 | 370–384 | 294–304 | 250–258 | 228–256 | 386–402 | 381–409 | 318–352 | |||
Rhinolophus swinnyi | RSA | 5 | 3/5 | 6/5 | 4/5 | 1/5 | 3/5 | 3/5 | 2/5 | 4/5 | 3/5 | 5/5 |
532–540 | 500–522 | 402–418 | 364 | 268–314 | 246–254 | 232–236 | 386–398 | 381–393 | 332–346 | |||