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Fig. 4 | BMC Research Notes

Fig. 4

From: A cancer cell-line titration series for evaluating somatic classification

Fig. 4

Recall performance of the BWA and Strelka pipeline with no GATK realignment or recalibration on the seven tumour cellularities with coverage down-sampled. Unaligned reads were randomly removed to create the down-sampled libraries. Variants were split into three groups based on their allele frequency in the 100 % tumour sample with maximum coverage, and recall was calculated with respect to this set of variants

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