A method for genotyping elite breeding stocks of leaf chicory (Cichorium intybus L.) by assaying mapped microsatellite marker loci

Ghedina, Andrea; Galla, Giulio; Cadalen, Thierry; Hilbert, Jean-Louis; Caenazzo, Silvano Tiozzo; Barcaccia, Gianni

doi:10.1186/s13104-015-1819-z

Table 2 Descriptive statistics over all the accessions

From: A method for genotyping elite breeding stocks of leaf chicory (Cichorium intybus L.) by assaying mapped microsatellite marker loci

	General statistics						H-statistics			F-statistics
Line	nPl	%	I	SM	n_a	n_e	H_o	H_e	H_a	F_is	F_st
P04	11	40.74	0.240	0.968	1.407	1.301	0.144	0.177	0.186	0.189	0.693
P31	18	66.67	0.429	0.925	1.741	1.573	0.291	0.313	0.186	0.070	0.457
P33	16	59.26	0.379	0.927	1.615	1.472	0.260	0.280	0.193	0.073	0.513
P11	11	40.74	0.279	0.950	1.423	1.379	0.234	0.212	0.193	−0.102	0.632
S02	8	29.63	0.210	0.976	1.346	1.281	0.130	0.156	0.189	0.167	0.729
S03	23	85.19	0.404	0.952	2.111	1.382	0.218	0.255	0.186	0.144	0.557
S31IS3.2	13	48.15	0.298	0.972	1.519	1.371	0.196	0.222	0.186	0.115	0.615
S31IS3.4	10	37.04	0.240	0.930	1.370	1.313	0.183	0.181	0.186	−0.013	0.686
S31S5.2	19	70.37	0.449	0.926	1.778	1.588	0.328	0.320	0.186	−0.024	0.444
S31S3	12	44.44	0.286	0.957	1.444	1.377	0.194	0.216	0.186	0.098	0.625
S31S5.1	20	74.07	0.477	0.961	2.000	1.585	0.284	0.351	0.186	0.190	0.391
Z22	10	37.04	0.202	0.966	1.407	1.229	0.130	0.142	0.186	0.087	0.753
Z23	16	59.26	0.389	0.949	1.741	1.503	0.301	0.278	0.186	−0.084	0.518
Z31	10	37.04	0.253	0.957	1.407	1.344	0.174	0.187	0.186	0.072	0.674
Z33	15	55.56	0.174	0.984	1.630	1.131	0.111	0.101	0.186	−0.104	0.825
Z34	7	25.93	0.160	0.989	1.259	1.215	0.111	0.120	0.186	0.073	0.792
U22	9	33.33	0.202	0.979	1.346	1.256	0.135	0.150	0.189	0.101	0.740
U24	13	48.15	0.304	0.945	1.519	1.409	0.199	0.224	0.186	0.112	0.611
QC03	18	66.67	0.455	0.941	1.692	1.608	0.307	0.344	0.193	0.108	0.402
QC31	7	25.93	0.199	0.971	1.385	1.274	0.164	0.136	0.193	−0.203	0.764
CS441	12	44.44	0.287	0.949	1.444	1.379	0.207	0.216	0.186	0.043	0.624
CS501	6	22.22	0.148	0.992	1.231	1.194	0.139	0.111	0.189	−0.260	0.808
SC24	5	18.52	0.129	0.971	1.192	1.177	0.125	0.098	0.193	−0.274	0.830
SE802	21	77.78	0.693	0.924	2.704	1.966	0.403	0.433	0.186	0.070	0.247
SE902	16	59.26	0.326	0.943	1.852	1.356	0.194	0.208	0.186	0.067	0.638
SE111S6	11	40.74	0.226	0.965	1.423	1.276	0.115	0.164	0.193	0.297	0.715
SEG111	5	18.52	0.139	1.000	1.200	1.200	0.200	0.200	0.194	0.000	0.652
SE111S7	8	29.63	0.222	0.990	1.423	1.295	0.202	0.155	0.193	−0.302	0.730
SE412	17	62.96	0.403	0.928	1.630	1.540	0.285	0.303	0.186	0.060	0.473
SE501	9	33.33	0.216	0.974	1.333	1.285	0.102	0.162	0.186	0.372	0.718
13	12	44.44	0.320	1.000	1.462	1.462	0.462	0.308	0.189	−0.500	0.465
11	8	29.63	0.213	1.000	1.308	1.308	0.308	0.205	0.189	−0.500	0.644
17	6	22.22	0.160	1.000	1.231	1.231	0.231	0.154	0.189	−0.501	0.733
49	11	40.74	0.293	1.000	1.423	1.423	0.423	0.282	0.189	−0.500	0.510
20	5	18.52	0.124	1.000	1.185	1.170	0.167	0.117	0.186	−0.421	0.796
38	6	22.22	0.149	1.000	1.222	1.207	0.204	0.142	0.186	−0.435	0.753
86	11	40.74	0.282	1.000	1.407	1.407	0.407	0.272	0.186	−0.500	0.528

The number of polymorphic loci (nPl), their frequency presented as percentage (%) of polymorphic loci on a total of 27 assayed, estimates of Shannon’s information index of phenotypic diversity (I), the genetic similarity coefficient or simple matching coefficient (SM), the average number of observed alleles (n_a) and the effective number of alleles (n_e), the observed heterozygosity (Ho), the expected heterozygosity computed using Levene (He), the average heterozygosity (Ha), Wright’s inbreeding coefficients F_is and F_it and the fixation index (F_st)

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ISSN: 1756-0500

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