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Table 1 Taxonomy of treeman functions

From: treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

Method set Description Examples
get Retrieve specific information about parts of a tree, often nodes getNdAge, getPrnt, getNdKids, getNdLng, getNdPrid, getNdPtid, getPath, getSubtree
calc Calculate tree statistics and tree associated information calcDstMtrx, calcTrDst, calcPhyDv, calcFrPrp
set Set node or overall tree values setNdSpn, setAge, setPD, setRoot, setTol
manip Change tree structure by adding or removing tips and nodes addTip, rmTip, pinTip