Table 5 DE genes identified by IPA
From: Differential expression of genes related to gain and intake in the liver of beef cattle
Pathway | Gene symbol | Gene name | Nominal P value |
|---|---|---|---|
Proteasome ubiquitination | DNAJC22 | DnaJ heat shock protein family (Hsp40) Member C22 | 5.12E−03 |
DNAJC5 | DnaJ heat shock protein family (Hsp40) Member C5 | 2.06E−02 | |
DNAJB2 | DnaJ heat shock protein family (Hsp40) Member B2 | 3.50E−02 | |
DNAJC16 | DnaJ heat shock protein family (Hsp40) Member C16 | 3.78E−02 | |
TAP2 | Transporter associated with antigen processing 2 | 5.39E−03 | |
USP40 | Ubiquitin specific peptidase 40 | 9.94E−03 | |
USP26 | Ubiquitin specific peptidase 26 | 4.55E−02 | |
UCHL1 | Ubiquitin C-terminal hydrolase L1 | 3.40E−02 | |
SKP1 | S-phase kinase-associated protein 1 | 1.39E−02 | |
USP14 | Ubiquitin specific peptidase 14 | 3.97E−02 | |
USP44 | Ubiquitin specific peptidase 44 | 2.82E−02 | |
PSMC5 | Proteasome 26S subunit, ATPase 5 | 4.77E−02 | |
PSMA5 | Proteasome subunit alpha 5 | 3.74E−02 | |
PSMD5 | Proteasome 26S subunit, non-ATPase 5 | 3.11E−02 | |
SMURF1 | SMAD specific E3 ubiquitin protein ligase 1 | 3.28E−02 | |
Chemokine signaling | PTK2B | Protein tyrosine kinase 2 beta | 2.72E−02 |
CAMK2B | Calcium/calmodulin dependent protein kinase ii beta | 3.28E−02 | |
CAMK4 | Calcium/calmodulin-dependent protein kinase IV | 3.74E−02 | |
PLCG1 | Phospholipase C, gamma 1 | 3.83E−02 | |
KRAS | Kirsten rat sarcoma viral oncogene homolog | 3.86E−02 | |
Selenocysteine biosynthesis II | PSTK | Phosphoseryl-TRNA kinase | 4.30E−02 |
SEPSECS | Sep (O-phosphoserine) TRNA:Sec (Selenocysteine) TRNA synthase | 3.01E−02 |