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Table 1 Comparison of commercially available RNA isolation kits for use with PCLS

From: RNA isolation from precision-cut lung slices (PCLS) from different species

Material

Kit

RNA yield (ng)

Absorbance 260/280

RIN

Avg.

Min.

Avg.

Min.

Avg.

Min.

Freshly isolated cells from rat PCLS

RNeasy Mini Kit, Qiagen

1146.5

855.0

2.04

1.99

7.8

7.4

Rat PCLS stored at −80 °C

RNeasy Mini Kit, Qiagen

<100

N/A

N/A

N/A

N/A

N/A

Rat PCLS stored at −80 °C

QIAzol®, Qiagen

413.3

127.8

1.64

1.37

2.7a

N/A

Rat PCLS stored at −80 °C

MagJET, ThermoFisher

737.0

312.3

2.21

1.94

5.8

N/A

Rat PCLS stored at −80 °C

MagMAXâ„¢, Ambion/ThermoFisher

1527.4

601.5

1.95

1.78

8.9

8.4

  1. Results represent the means of at least three samples
  2. N/A not available
  3. aN/A data were calculated as RIN zero (4 out of 6 samples)