Table 3 Annotation statistics
Total transcriptome (144,213 transcripts) | Highly expressed (848 transcripts) | |||
|---|---|---|---|---|
Count | Percent | Count | Percent | |
Transcripts with long ORF | 40408 | 28.02 | 336 | 39.62 |
Transcripts with complete long ORF | 8678 | 6.02 | 258 | 30.42 |
Against Swiss-Prot database | ||||
Significant BLAST match | 32056 | 22.23 | 428 | 50.47 |
Transcripts with orthologs | 15246 | 10.57 | 336 | 39.62 |
Transcripts with homologs | 16810 | 11.66 | 92 | 10.85 |
Transcripts with ORF but no BLAST hit | 15161 | 10.51 | 145 | 17.10 |
Against (nr) BLAST database | ||||
Significant BLAST match | – | – | 542 | 63.92 |
Transcripts with orthologs | – | – | 469 | 55.31 |
Transcripts with homologs | – | – | 73 | 8.61 |
Transcripts with ORF but no BLAST hit | – | – | 61 | 7.19 |