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Fig. 1 | BMC Research Notes

Fig. 1

From: Treehouse: a user-friendly application to obtain subtrees from large phylogenies

Fig. 1

A simple three-step workflow for using treehouse. A Using treehouse requires three simple steps: (1) Tree selection: select a phylogeny from the treehouse database or a user-provided phylogeny that you want a subtree for; (2) Taxon selection: upload a list of taxa that a user wants to include in the subtree; and (3) Subtree output: download the newick-formatted text file or scalable-vector-graphic-formatted pdf file of the subtree. B Treehouse’s user interface features a navigation bar (a) to toggle between phylogenies available in treehouse’s databases for animals, fungi, plants, and the tree of life (left) and a user provided phylogeny in userTree (right). b To enable easy usage of treehouse, quick start directions are displayed. i A dropdown menu allows for selection of a larger phylogeny to obtain a subtree from when using phylogenies in treehouse’s database. When using userTree, a browser function allows a user to upload their own phylogeny. ii A browser function allows the user to upload a list of taxa for the desired subtree. c A list of all possible taxa in phylogeny is provided

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