Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Methodology description | Document file (.docx) | |
Data file 2 | Descriptive statistics of assembly-sequencing | Document file (.docx) | |
Data file 3 | FigS1 Size_distribution | Image file (.jpg) | |
Data file 4 | FigS2 GeneOntology | Image file (.jpg) | |
Data file 5 | FigS3 Differential_expression | Image file (.jpg) | |
Data file 6 | Raw RNA‐seq. Reads Brain tissue | Fastq files (.fastq) | NCBI Sequence Read Archive |
Data file 7 | Raw RNA‐seq. Reads Muscle tissue | Fastq files (.fastq) | NCBI Sequence Read Archive |
Data file 8 | Trinity144 | Fasta file (.fasta) | |
Data file 9 | Predicted non-redundant Open Reading Frames (ORFs) | Fasta file (.fasta) | NCBI GenBank https://identifiers.org/ncbi/insdc:GHGR00000000.1 |
Data file 10 | Megablast hit aligment of non-redundant ORF unigenes to reference nucleotide databases | Spreadsheet (.xlsx) | |
Data file 11 | Blastx homology search of non-redundant ORF unigenes to reference protein databases | Spreadsheet (.xlsx) | |
Data file 12 | Krona_pie_chart_on_Non_redundant_ORF_to_NCBI_nt_and_rnaREF_seq_2018__HTML_html | HTML file (.html) | |
Data file 13 | Protein family (Pfam) assignation to non-redundant ORF unigenes | Spreadsheet (.xlsx) | |
Data file 14 | GOslim annotation of non-redundant ORF unigene sequences | Spreadsheet (.xlsx) | |
Data file 15 | KEGG pathway annotation of non-redundant ORF unigene sequences | Spreadsheet (.xlsx) | |
Data file 16 | Raw_Cufflinks_Brain_transcript_expression | Cufflinks output file (.txt) | |
Data file 17 | Raw_Cufflinks_Muscle_transcript_expression | Cufflinks output file (.txt) | |
Data file 18 | Raw_Cuffdiff_Brain_Muscle_transcript_differential_expression_testing | Cuffdiff output file (.txt) | |
Data file 19 | Differentialy expressed non-redundant ORF unigenes at FDR_0.01 | Spreadsheet (.xlsx) | |
Data file 20 | Salmo trutta m. Fario—mapped SNP_to_ORF | Varian Call Format file (.vcf) | |
Data file 21 | SNP context sequence | Spreadsheet (.xlsx) |