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Table 1 Overview of data files/data sets

From: De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery

Label Name of data file/data set File types (file extension) Data repository and identifier (DOI or accession number)
Data file 1 Methodology description Document file (.docx) Figshare https://doi.org/10.6084/m9.figshare.12902474.v1
Data file 2 Descriptive statistics of assembly-sequencing Document file (.docx) Figshare https://doi.org/10.6084/m9.figshare.12902474.v1
Data file 3 FigS1 Size_distribution Image file (.jpg) Figshare https://doi.org/10.6084/m9.figshare.12902405.v2
Data file 4 FigS2 GeneOntology Image file (.jpg) Figshare https://doi.org/10.6084/m9.figshare.12902405.v2
Data file 5 FigS3 Differential_expression Image file (.jpg) Figshare https://doi.org/10.6084/m9.figshare.12902405.v2
Data file 6 Raw RNA‐seq. Reads Brain tissue Fastq files (.fastq) NCBI Sequence Read Archive
https://identifiers.org/insdc.sra:SRP151838
Data file 7 Raw RNA‐seq. Reads Muscle tissue Fastq files (.fastq) NCBI Sequence Read Archive
https://identifiers.org/insdc.sra:SRP151838
Data file 8 Trinity144 Fasta file (.fasta) Figshare https://doi.org/10.6084/m9.figshare.7326464
Data file 9 Predicted non-redundant Open Reading Frames (ORFs) Fasta file (.fasta) NCBI GenBank https://identifiers.org/ncbi/insdc:GHGR00000000.1
Data file 10 Megablast hit aligment of non-redundant ORF unigenes to reference nucleotide databases Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.7712708.v4
Data file 11 Blastx homology search of non-redundant ORF unigenes to reference protein databases Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.7712708.v4
Data file 12 Krona_pie_chart_on_Non_redundant_ORF_to_NCBI_nt_and_rnaREF_seq_2018__HTML_html HTML file (.html) Figshare https://doi.org/10.6084/m9.figshare.7712708.v4
Data file 13 Protein family (Pfam) assignation to non-redundant ORF unigenes Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.12905777.v2
Data file 14 GOslim annotation of non-redundant ORF unigene sequences Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.12905777.v2
Data file 15 KEGG pathway annotation of non-redundant ORF unigene sequences Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.12905777.v2
Data file 16 Raw_Cufflinks_Brain_transcript_expression Cufflinks output file (.txt) Figshare https://doi.org/10.6084/m9.figshare.12905747.v1
Data file 17 Raw_Cufflinks_Muscle_transcript_expression Cufflinks output file (.txt) Figshare https://doi.org/10.6084/m9.figshare.12905747.v1
Data file 18 Raw_Cuffdiff_Brain_Muscle_transcript_differential_expression_testing Cuffdiff output file (.txt) Figshare https://doi.org/10.6084/m9.figshare.12905747.v1
Data file 19 Differentialy expressed non-redundant ORF unigenes at FDR_0.01 Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.12905747.v1
Data file 20 Salmo trutta m. Fario—mapped SNP_to_ORF Varian Call Format file (.vcf) Figshare https://doi.org/10.6084/m9.figshare.12905831.v1
Data file 21 SNP context sequence Spreadsheet (.xlsx) Figshare https://doi.org/10.6084/m9.figshare.12905831.v1
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