Table 1 Overview of data files/data sets
From: TGIF-DB: terse genomics interface for developing botany
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data set 1 | Ao_gene_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 2 | Ao_promoter_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 3 | Ao_protein_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 4 | Ao_proteins_At_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 5 | Ao_proteins_ELM.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 6 | Ao_proteins_Os_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 7 | Ao_proteins_Pfam.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 8 | Ao_transcript_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 9 | Ao_transcripts_hairpin_miRNA_blastn.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 10 | Ca_gene_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 11 | Ca_promoter_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 12 | Ca_protein_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 13 | Ca_proteins_At_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 14 | Ca_proteins_ELM.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 15 | Ca_proteins_Os_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 16 | Ca_proteins_Pfam.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 17 | Ca_transcript_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 18 | Ft_gene_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 19 | Ft_promoter_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 20 | Ft_protein_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 21 | Ft_proteins_At_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 22 | Ft_cds_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 23 | Ft_proteins_Os_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 24 | Ft_proteins_Pfam.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 25 | Ft_transcript_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 26 | Pg_gene_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 27 | Pg_promoter_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 28 | Pg_protein_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 29 | Pg_proteins_At_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 30 | Pg_proteins_ELM.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 31 | Pg_proteins_Os_proteins_blastp.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 32 | Pg_proteins_Pfam.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 33 | Pg_transcript_seqs.fa | Fasta (.fa) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data set 34 | Pg_transcripts_hairpin_miRNA_blastn.txt | Text (.txt) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |
Data file 1 | Figure_TGIF-DB_snapshots.tif | Figure (.tif) file | Figshare (https://doi.org/10.6084/m9.figshare.13565168.v2) [16] |