From: The brain transcriptome of the wolf spider, Schizocosa ocreata
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
---|---|---|---|
Data set 1 | Raw illumina data | FASTQ files (.fq) | NCBI SRA: https://identifiers.org/ncbi/insdc.sra:SRP302932 [45] |
Data file 1 | Trimmed-read FastQC statistics | PDF file (.pdf) | NCBI GEO: https://identifiers.org/geo:GSE168766 [46] |
Data set 2 | Schizocosa ocreata immature male 1, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZN00000000 [47] |
Data set 3 | Schizocosa ocreata immature male 2, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZS00000000 [48] |
Data set 4 | Schizocosa ocreata immature male 3, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZT00000000 [49] |
Data set 5 | Schizocosa ocreata immature female 2, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZM00000000 [50] |
Data set 6 | Schizocosa ocreata immature female 3, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZR00000000 [51] |
Data set 7 | Schizocosa ocreata mature male 2, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZP00000000 [52] |
Data set 8 | Schizocosa ocreata mature male 3, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZW00000000 [53] |
Data set 9 | Schizocosa ocreata mature female 1, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZO00000000 [54] |
Data set 10 | Schizocosa ocreata mature female 2, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZU00000000 [55] |
Data set 11 | Schizocosa ocreata mature female 3, de novo transcriptome assembly | FASTA files (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZV00000000 [56] |
Data set 12 | Schizocosa ocreata consensus coding sequences | FASTA file (.fa) | NCBI TSA: https://identifiers.org/ncbi/insdc:GIZQ00000000 [57] |
Data file 2 | Transcriptome assembly statistics | PDF file (.pdf) | NCBI GEO https://identifiers.org/geo:GSE168766 [46] |
Data file 3 | Gene annotations | Tabular text file (.txt) | NCBI GEO https://identifiers.org/geo:GSE168766 [46] |
Data file 4 | Gene expression values | Tabular text file (.txt) | NCBI GEO https://identifiers.org/geo:GSE168766 [46] |
Data file 5 | Differential expression values | MS excel file (.xlsx) | NCBI GEO https://identifiers.org/geo:GSE168766 [46] |
Data file 6 | Transcriptome flow (TFLOW): de novo transcriptome analysis pipeline | Zip archive (.zip) | Zenodo https://doi.org/10.5281/zenodo.3817474 [58] |
Data file 7 | Gene clustering analysis script | Python script (.py) | Zenodo https://doi.org/10.5281/zenodo.4330738 [59] |
Data file 8 | Differential expression analysis script | R script (.R) | Zenodo https://doi.org/10.5281/zenodo.4330738 [59] |