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Fig. 2 | BMC Research Notes

Fig. 2

From: SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments

Fig. 2

The benchmarking and optimization of SnakeCube based on the L. sceleratus dataset. a Reports of average memory and load monitoring records of three serial runs, with each point representing a rule of the container. b The rules were further independently monitored for their time-scaling efficiency when run multiple times with an increasing thread allowance. The memory properties are reported as in megabytes and only the highest value at any point is recorded. Time is measured in seconds. Rules are presented in the down-right side with their order of appearance

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