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Fig. 1 | BMC Research Notes

Fig. 1

From: On clustering for cell-phenotyping in multiplex immunohistochemistry (mIHC) and multiplexed ion beam imaging (MIBI) data

Fig. 1

Comparison of the cell labels estimated by PhenoGraph, flowMeans and SamSPECTRAL with the true cell labels for a particular subject. The top two rows show the scatter-plot of TSNE1 and TSNE2 for different cells colored by three different labels, true labels, estimated labels using flowMeans and estimated labels using PhenoGraph for varying number of nearest neighbor(NN)-sizes. The bottom two rows show the scatter-plot of TSNE1 and TSNE2 for different cells colored by the estimated labels using SamSPECTRAL for different values (from low to high) of sigma and separation factor (sep_fac)

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BMC Research Notes

ISSN: 1756-0500

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