Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data set 1 | Effect of reduced glucocorticoid receptor-RNA affinity on dexamethasone treatment | FASTQ files (fastq.gz) | NCBI GEO (https://identifiers.org/geo:GSE216337) [25] |
Data file 1 | 4sU-seq protocol | PDF (.pdf) | Zenodo (https://doi.org/10.5281/zenodo.7349186) [26] |
Data file 2 | Count matrix of deduplicated reads over exons | CSV (.csv) | NCBI GEO (https://identifiers.org/geo:GSE216337) [25] |
Data file 3 | MultiQC quality report | HTML (.html) | Zenodo (https://doi.org/10.5281/zenodo.7269135) [27] |
Data set 2 | Data processing scripts | Bash script (.sh), R code (.r) | Zenodo (https://doi.org/10.5281/zenodo.7349062) [28] |