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Table 1 Percent SNP effects based on their location respective to the nearest transcript

From: Lifting of the 1,000 wheat exome project SNPs from Triticum aestivum cv. Chinese Spring assembly RefSeq v1.0 to RefSeq v2.1

Location

Count

Percentage

Downstream

1,240,165

22.77

Exon

557,842

10.24

Intergenic

1,887,968

34.66

Intron

594,000

10.90

Splice site acceptor

2,012

00.04

Splice site donor

1,901

00.04

Splice site region

28,984

00.53

Upstream

1,035,877

19.02

3’-UTR

70,492

01.29

5’-UTR

28,030

00.52

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BMC Research Notes

ISSN: 1756-0500

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