Table 1 Quality control and data filtering
From: MicroRNAs associated with AGL6 and IAA9 function in tomato fruit set
Sample | Total reads | N%>10% | 5’ adapter contamination | 3’ adapter null or insert null | With polyA/T/G/C | Clean reads | Clean reads (18–30 nt) |
|---|---|---|---|---|---|---|---|
ctrl | 30,618,662 (100%) | 1836 (0.01%) | 16,153 (0.05%) | 684,938 (2.24%) | 63,506 (0.21%) | 29,852,229 (97.50%) | 2,499,669 |
AGL6sil | 26,439,854 (100%) | 651 (0.00%) | 33,216 (0.13%) | 748,029 (2.83%) | 75,428 (0.29%) | 25,582,530 (96.76%) | 3,552,836 |
IAA9sil | 27,947,482 (100%) | 1701 (0.01%) | 28,256 (0.10%) | 515,332 (1.84%) | 59,739 (0.21%) | 27,342,454 (97.84%) | 2,864,283 |