Table 3 Known differentially expressed miRNAs
From: MicroRNAs associated with AGL6 and IAA9 function in tomato fruit set
miRNAs | Fold change (IAA9sil vs. ctrl) | Mature sequence | Number of target transcripts |
|---|---|---|---|
sly-miR482e-5p | -1.75 | UGUGGGUGGGGUGGAAAGAUU | 10 |
sly-miR167a | -1.77 | UGAAGCUGCCAGCAUGAUCUA | 5 |
sly-miR395a | -1.76 | CUGAAGUGUUUGGGGGAACUCC | 4 |
sly-miR530 | -3.04 | AGGUGUAGGUGUUCAUGCAGA | 3 |
sly-miR171b-5p | 1.66 | AUAUUGGUGCGGUUCAAUUAG | 3 |
sly-miR394-3p | -1.68 | AGGUGGGCAUACUGUCAACA | 2 |
sly-miR393 | -3.46 | AUCAUGCGAUCUCUUCGGAAU | Â |
miRNAs | Fold change (AGL6sil vs. ctrl) | Mature sequence | Number of target transcripts |
sly-miR6024 | -1.88 | UUUUAGCAAGAGUUGUUUUACC | 40 |
sly-miR172a | -4.70 | AGAAUCUUGAUGAUGCUGCAU | 18 |
sly-miR9476-5p | -3.56 | UCUAGUCCUGCAUCUUUUUUU | 16 |
sly-miR172c | -2.13 | AGAAUCUUGAUGAUGCUGCAG | 15 |
sly-miR164a-5p | -2.71 | UGGAGAAGCAGGGCACGUGCA | 11 |
sly-miR482e-5p | -4.01 | UGUGGGUGGGGUGGAAAGAUU | 9 |
sly-miR390a-5p | -3.27 | AAGCUCAGGAGGGAUAGCACC | 9 |
sly-miR482a | 1.79 | UUUCCAAUUCCACCCAUUCCUA | 8 |
sly-miR10537 | -2.12 | AUUUACCCCAAGUUCGUUGUC | 8 |
sly-miR9474-5p | 1.90 | UGUAGAAGUCAUGAAUAAAAUG | 7 |
sly-miR171b-3p | -2.96 | UUGAGCCGUGCCAAUAUCACG | 6 |
sly-miR396a-3p | -4.63 | GUUCAAUAAAGCUGUGGGAAG | 5 |
sly-miR9472-5p | -4.71 | UUUCAGUAGACGUUGUGAAUA | 5 |
sly-miR167a | -2.75 | UGAAGCUGCCAGCAUGAUCUA | 5 |
sly-miR394-5p | -1.86 | UUGGCAUUCUGUCCACCUCC | 5 |
sly-miR5300 | -1.96 | UCCCCAGUCCAGGCAUUCCAAC | 5 |
sly-miR169e-3p | -3.48 | UGGCAAGCAUCUUUGGCGACU | 5 |
sly-miR168a-5p | -1.76 | UCGCUUGGUGCAGGUCGGGAC | 4 |
sly-miR171a | -1.57 | UGAUUGAGCCGUGCCAAUAUC | 4 |
sly-miR9470-5p | -2.48 | UGAAAUCCAUGAGCCUAAACU | 4 |
sly-miR482d-5p | -2.58 | GGAGUGGGUGGGAUGGAAAAA | 4 |
sly-miR9475-3p | -1.53 | CUACAAUGUAGAGAUCGUUUU | 3 |
sly-miR171f | -3.08 | UAUUGGCCUGGUUCACUCAGA | 3 |
sly-miR164b-3p | -2.03 | CACGUGUUCUCCUUCUCCAAC | 3 |
sly-miR9476-3p | -1.85 | AAAAAGAUGCAGGACUAGACC | 3 |
sly-miR403-3p | -1.70 | CUAGAUUCACGCACAAGCUCG | 3 |
sly-miR530 | -3.54 | AGGUGUAGGUGUUCAUGCAGA | 3 |
sly-miR171b-5p | -2.12 | AUAUUGGUGCGGUUCAAUUAG | 3 |
sly-miR168a-3p | -3.89 | CCUGCCUUGCAUCAACUGAAU | 2 |
sly-miR164a-3p | -5.53 | CAUGUGCCUGUUUUCCCCAUC | 2 |
sly-miR403-5p | -4.42 | CGUUUGUGCGUGAAUCUAACA | 2 |
sly-miR6027-5p | -2.20 | AUGGGUAGCACAAGGAUUAAUG | 2 |
sly-miR394-3p | -8.78 | AGGUGGGCAUACUGUCAACA | 2 |
sly-miR166c-5p | -4.62 | GGGAUGUUGUCUGGCUCGACA | 1 |
sly-miR171c | -1.99 | UAUUGGUGCGGUUCAAUGAGA | 1 |
sly-miR5304 | -1.51 | UCAAUGCUACAUACUCAUCCC | 1 |
sly-miR397-3p | 1.86 | UCAACGCUAAACUCGAUCAUG | 1 |
sly-miR9475-5p | -1.58 | AACGAUCUCUACAUUGUAGGC | Â |
sly-miR398a | 3.20 | UAUGUUCUCAGGUCGCCCCUG | Â |
sly-miR390a-3p | -1.71 | CGCUAUCCAUCCUGAGUUUUA | Â |
sly-miR1919a | -2.24 | ACGAGAGUCAUCUGUGACAGG | Â |
sly-miR167b-5p | -2.34 | UAAAGCUGCCAGCAUGAUCUGG | Â |
sly-miR9471a-5p | -1.53 | CAGGUGCUCACUCAGCUAAUA | Â |
sly-miR9471b-5p | -3.37 | GAGGUGCUCACUCAGCUAAUA | Â |
sly-miR393 | -1.87 | AUCAUGCGAUCUCUUCGGAAU | Â |