Table 1 Overview of data files/data sets

Data file 1

collection_POPULUS_NIGRA_RNASEQ_PANEL (list of the studied genotypes)

Tabular text file (.tab)

Recherche Data Gouv repository: https://doi.org/10.57745/GKXDSQ; [10]

Data set 1

Information on the studied genotypes

Web files (.html)

GnpIS:

collection:POPULUS_NIGRA_RNASEQ_PANEL; [11]

Data file 2

SNV_POPULUS_NIGRA_RNASEQ_PANEL_quality_control (Quality control figures)

PDF file (.pdf)

Recherche Data Gouv repository: https://doi.org/10.57745/SSDFV2; [13]

Data set 2

Raw RNA-seq files

Sequencing files (.fastq)

NCBI Sequence Read Archive: SPR188754; [14]

Data set 3

Steps of the experiment, from growth conditions to bioinformatic analyses

Web files (.html)

CATdb: experiment = 640; [15]

Data file 3

SNV_raw_POPULUS_NIGRA_RNASEQ_PANEL (Initial variant calling file)

Variant Call Format file (.vcf)

Recherche Data Gouv repository: https://doi.org/10.57745/RBR6X0; [26]

Data file 4

SNV_imputated_POPULUS_NIGRA_RNASEQ_PANEL (Imputated variant calling file)

Variant Call Format file (.vcf)

Recherche Data Gouv repository: https://doi.org/10.57745/5IQLI9; [28]

Data file 5

SNV_imputated_POPULUS_NIGRA_RNASEQ_PANEL.variant_function (Annotation file1)

Tabular text files (.tab)

Recherche Data Gouv repository: https://doi.org/10.57745/PAEKL7; [29]

Data file 6

SNV_imputated_POPULUS_NIGRA_RNASEQ_PANEL.exonic_variant_function (Annotation file2)

Tabular text files (.tab)

Recherche Data Gouv repository: https://doi.org/10.57745/EG9HOE; [30]

Data file 7

SNV_imputated_POPULUS_NIGRA_RNASEQ_PANEL_analysis_figures (Analysis figures)

PDF file (.pdf)

Recherche Data Gouv repository: https://doi.org/10.57745/BTBR; [32]