Table 1 Overview of data files/data sets

Data file 1

Overview of REH sequencing datasets

PNG (.png)

Figshare: https://doi.org/10.6084/m9.figshare.23966340 [13]

Data file 2

Supplemental Methods

PDF (.pdf)

Figshare: https://doi.org/10.6084/M9.FIGSHARE.22643065 [14]

Data file 3

Short Tandem Repeat Analysis of the REH cell line

PDF (.pdf)

Figshare: https://doi.org/10.6084/m9.figshare.24131670 [15]

Dataset 1

REH_WGS_Illumina_HiSeqX_TruSeqDnaPcrFree_1

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR10882610 [16]

Dataset 2

REH_WGS_Illumina_HiSeqX_TruSeqDnaPcrFree_2

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR10882609 [17]

Dataset 3

REH_WGS_Illumina_HiSeqX_TruSeqDnaPcrFree_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704824 [18]

Dataset 4

REH_WGS_PacBio_SequelII_SMRT_CLR

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22805329 [19]

Dataset 5

REH_WGS_PacBio_SequelII_SMRT_HiFi

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR19123265 [20]

Dataset 6

REH_WGS_PacBio_SMRT_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704823 [21]

Dataset 7

REH_WGS_PacBio_SequelII_SMRT_denovo_hifiasm

FASTA (.fa)

SRA: https://identifiers.org/insdc.sra:SRR23704827 [22]

Dataset 8

REH_WGS_ONT_PromethION_10kb

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22730978 [23]

Dataset 9

REH_WGS_ONT_PromethION_20kb

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22444744 [24]

Dataset 10

REH_WGS_ONT_PromethION_30kb

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR23054498 [25]

Dataset 11

REH_WGS_ONT_PromethION_60kb_SRE

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22444743 [26]

Dataset 12

REH_WGS_ONT_PromethION_SRE

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22444742 [27]

Dataset 13

REH_WGS_ONT_PromethION_Ultralong

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR21147769 [28]

Dataset 14

REH_WGS_ONT_PromethION_Ultralong_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704822 [29]

Dataset 15

REH_WGS_ONT_PromethION_Ultralong_denovo_flye_medaka

FASTA (.fasta)

SRA: https://identifiers.org/insdc.sra:SRR23704826 [30]

Dataset 16

REH_WGS_ONT_PromethION_Ultralong_PacBio_SMRT_denovo_flye_racon

FASTA (.fasta)

SRA: https://identifiers.org/insdc.sra:SRR23704825 [31]

Dataset 17

REH_WGS_MGISEQ_2000RS_stLFR

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR18907774 [32]

Dataset 18

REH_WGS_Illumina_HiSeq2500_10x_Gemcode_HW_hg37

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR10902121 [33]

Dataset 19

REH_WGS_Illumina_HiSeq2500_10x_Gemcode_NW_hg37

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR10902122 [34]

Dataset 20

REH_ScAtacSeq_Illumina_NovaSeq6000_10x_Chromium_1

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22320001 [35]

Dataset 21

REH_ScAtacSeq_Illumina_NovaSeq6000_10x_Chromium_2

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22320000 [36]

Dataset 22

REH_ScAtacSeq_Illumina_NovaSeq6000_10x_Chromium_3

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22319999 [37]

Dataset 23

REH_ScAtacSeq_Illumina_NovaSeq6000_10x_Chromium_4

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22319998 [38]

Dataset 24

REH_ScAtacSeq_Illumina_NovaSeq6000_10x_Chromium_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR10907069 [39]

Dataset 25

REH_EMSeq_Illumina_NovaSeq6000_NEBNext_100ng

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR23020114 [40]

Dataset 26

REH_EMSeq_Illumina_NovaSeq6000_NEBNext_10ng

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR23020113 [41]

Dataset 27

REH_RnaSeq_Illumina_NovaSeq6000_TruSeqStrandedTotalRna_1

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR10882846 [42]

Dataset 28

REH_RnaSeq_Illumina_NovaSeq6000_TruSeqStrandedTotalRna_2

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR10882845 [43]

Dataset 29

REH_RnaSeq_Illumina_NovaSeq6000_TruSeqStrandedTotalRna_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704830 [44]

Dataset 30

REH_RnaSeq_PacBio_SequelII_IsoSeq_standard

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22729869 [45]

Dataset 31

REH_RnaSeq_PacBio_SequelII_IsoSeq_long

FASTQ (fastq.gz)

SRA: https://identifiers.org/insdc.sra:SRR22729868 [46]

Dataset 32

REH_RnaSeq_PacBio_SequelII_IsoSeq_standard_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704829 [47]

Dataset 33

REH_RnaSeq_PacBio_SequelII_IsoSeq_long_hg38

BAM (.bam)

SRA: https://identifiers.org/insdc.sra:SRR23704828 [48]