Mukai Y, Suyama Y, Tsumura Y, Kawahara T, Yoshimaru H, Kondo T, Tomaru N, Kuramoto N, Murai M: A linkage map for sugi (Cryptomeria japonica) based on RFLP, RAPD, and isozyme loci. Theor Appl Genet. 1995, 90: 835-840. 10.1007/BF00222019.
Article
CAS
PubMed
Google Scholar
Iwata H, Ujino-Ihara T, Yoshimaru H, Nagasaka K, Mukai Y, Tsumura Y: Cleaved amplified polymorphic sequence markers in sugi, Cryptomeria japonica D. Don, and their location on a linkage map. Theor Appl Genet. 2001, 103: 881-895. 10.1007/s001220100732.
Article
CAS
Google Scholar
Tani N, Takahashi T, Iwata H, Mukai Y, Ujino-Ihara T, Matsumoto A, Yoshimura K, Yoshimaru H, Murai M, Nagasaka K, Tsumura Y: A consensus linkage map for sugi (Cryptomeria japonica) from two pedigrees, based on microsatellites and expressed sequence tags. Genetics. 2003, 165: 1551-1568.
CAS
PubMed Central
PubMed
Google Scholar
Hizume M, Kondo T, Shibata F, Ishizuka R: Flow cytometric determination of genome size in the Taxodiaceae, Cupressaceae sensu stricto, and Sciadopityaceae. Cytologia. 2001, 66: 307-311.
Article
Google Scholar
Ujino-Ihara T, Kanamori H, Yamane H, Taguchi Y, Namiki N, Mukai Y, Yoshimura K, Tsumura Y: Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers. Plant Mol Biol. 2005, 59: 895-907. 10.1007/s11103-005-2080-y.
Article
CAS
PubMed
Google Scholar
Yoshida K, Nishiguchi M, Futamura N, Nanjo T: Expressed sequence tags from Cryptomeria japonica sapwood during the drying process. Tree Physiol. 2007, 27: 1-9.
Article
CAS
PubMed
Google Scholar
Futamura N, Totoki Y, Toyoda A, Igasaki T, Nanjo T, Seki M, Sakaki Y, Mari A, Shinozaki K, Shinohara K: Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili. BMC Genomics. 2008, 9: 383-10.1186/1471-2164-9-383.
Article
PubMed Central
PubMed
Google Scholar
Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok PY, Gish WR: A general approach to single-nucleotide polymorphism discovery. Nat Genet. 1999, 23: 452-456. 10.1038/70570.
Article
CAS
PubMed
Google Scholar
Tang J, Vosman B, Voorrips RE, Linden van der CG, Leunissen JA: QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC Bioinformatics. 2006, 7: 438-10.1186/1471-2105-7-438.
Article
PubMed Central
PubMed
Google Scholar
Reed GH, Wittwer CT: Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem. 2004, 50: 1748-54. 10.1373/clinchem.2003.029751.
Article
CAS
PubMed
Google Scholar
Croxford AE, Rogers T, Caligari PD, Wilkinson MJ: High-resolution melt analysis to identify and map sequence-tagged site anchor points onto linkage maps: a white lupin (Lupinus albus) map as an exemplar. New Phytol. 2008, 180: 594-607. 10.1111/j.1469-8137.2008.02588.x.
Article
CAS
PubMed
Google Scholar
Chagné D, Gasic K, Crowhurst RN, Han Y, Bassett HC, Bowatte DR, Lawrence TJ, Rikkerink EH, Gardiner SE, Korban SS: Development of a set of SNP markers present in expressed genes of the apple. Genomics. 2008, 22: 353-358. 10.1016/j.ygeno.2008.07.008.
Article
Google Scholar
Wu SB, Tavassolian I, Rabiei G, Hunt P, Wirthensohn M, Gibson JP, Ford CM, Sedgley M: apping SNP-anchored genes using high-resolution melting analysis in almond. Mol Genet Genomics. 2009, 282: M273-81. 10.1007/s00438-009-0464-4.
Article
Google Scholar
Wu SB, Wirthensohn M, Hunt P, Gibson J, Sedgley M: High resolution melting curve (HRM) analysis of almond SNPs derived from EST database. Theor Appl Genet. 2008, 118: 1-14. 10.1007/s00122-008-0870-8.
Article
CAS
PubMed
Google Scholar
Huang X, Madan A: CAP3: A DNA Sequence Assembly Program. Genome Res. 1999, 9: 868-877. 10.1101/gr.9.9.868.
Article
CAS
PubMed Central
PubMed
Google Scholar
Wheelan SJ, Church DM, Ostell JM: Spidey: a tool for mRNA-to-genomic alignments. Genome Res. 2001, 11: 1952-1957.
CAS
PubMed Central
PubMed
Google Scholar
Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000, 132: 365-386.
CAS
PubMed
Google Scholar
Tsumura Y, Yoshimura K, Tomaru N, Ohba K: Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theor Appl Genet. 1995, 91: 1222-1236. 10.1007/BF00220933.
Article
CAS
PubMed
Google Scholar
Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C: Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences. Plant Mol Biol. 2004, 54: 461-470. 10.1023/B:PLAN.0000036376.11710.6f.
Article
PubMed
Google Scholar
Ewing B, Green P: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8: 186-194.
Article
CAS
PubMed
Google Scholar
Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8: 175-85.
Article
CAS
PubMed
Google Scholar
Pavy N, Parsons LS, Paule C, MacKay J, Bousquet J: Automated SNP detection from a large collection of white spruce expressed sequences: contributing factorsand approaches for the categorization of SNPs. BMC Genomics. 2006, 7: 174-10.1186/1471-2164-7-174.
Article
PubMed Central
PubMed
Google Scholar
Kado T, Yoshimaru H, Tsumura Y, Tachida H:DNA variation in a conifer, Cryptomeria japonica (Cupressaceae sensu lato). Genetics. 2003, 164: 1547-1559.
CAS
PubMed Central
PubMed
Google Scholar
Ujino-Ihara T, Matsumuto A, Iwata H, Yoshimura K, Tsumura Y: Single-strand conformation polymorphism of sequence-tagged site markers based on partial sequences of cDNA clones in Cryptomeria japonica. Genes Genet Syst. 2002, 77: 251-257. 10.1266/ggs.77.251.
Article
CAS
PubMed
Google Scholar