Table 1 The distribution of G4 motifs in differentially expressed genes (Illumina IDs) after PhenDC3 and 360A treatment
From: Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines
Illumina IDs | No. of Genes (with G4 motif) | No. of G4 motifs | Average loop length | |
|---|---|---|---|---|
unchangeda | 9,456 | 3.7 | ||
8979A -up-regulatedb | 117 | 83 | ||
8979A -down-regulatedb | 85 | 55 | ||
PhenDC3 - up-regulatedb | 1529 | 1242 (975) | 3,566 | 3.7 |
PhenDC3 - down-regulatedb | 1157 | 970 (829) | 2,405 | 3.7 |
360A - up-regulatedb | 401 | 312 (233) | 772 | 3.8 |
360A - down-regulatedb | 249 | 215 (136) | 337 | 3.8 |