Intraspecific sequence variation and differential expression in starch synthase genes of Arabidopsis thaliana

BMC Research Notes

Table 3 Nonsynonymous substitutions in starch synthases of A. thaliana accessions

	Nonsynonymous substitutions
*AtSSI*	S57F, Q89ED, A191T, K309N, E326D, P327S, S506N, T584A
*AtSSII*	S29F, H34P, P37A, I138M, D197Y, V198E, E290V, S329A, M369T, F374Y, S392R, R765T, T769S
*AtSSIII*	N68D, D92N, M197I, T279I, R321T, T326A, N352D, G363R, F392V, L393M, G398S, Q408R, L410I, N421D, R425K, D430E, R431K, M438T, E451K, L484F, G502V, T522A, E525GV, I571F, V616I, I623L, V671I, F697Y, Q722H, A773P, H779Y, I844V, D875E
*AtSSIV*	I18F, P34H, I67F, L84P, I144V, A146T, I150V, K156Q, I180V, N228S, G310S, I377L, L499I, I516T, E604D, Q767H, H857L
*AtGBSS*	N9H, H20Q, V28L, A29S, G35A, N51K, S66L, R68G, V72G, V140I, M256I, F291L

Protein sequences were compared to those from Oryza sativa, Zea mays, Solanum tuberosum, Populus trichocarpa, Hordeum vulgare, Phaseolus vulgaris, Triticum aestivum and Physcomitrella patens (sequences available in Genbank). Substitutions among A. thaliana accessions which affect positions that are usually highly conserved among plant species are printed bold.

ISSN: 1756-0500