Open Access

Inactivation of non-enveloped virus by 1,5 iodonaphthyl azide

  • Paridhi Gupta1,
  • Anuj Sharma1,
  • Viard Mathias2,
  • Yossef Raviv2,
  • Robert Blumenthal3 and
  • Radha K Maheshwari1Email author
BMC Research Notes20158:44

https://doi.org/10.1186/s13104-015-1006-2

Received: 15 September 2014

Accepted: 4 February 2015

Published: 15 February 2015

Abstract

Background

A photoactive hydrophobic agent 1,5-iodonaphthyl-azide (INA), has been previously shown to completely inactivate the enveloped viruses. INA sequesters into the lipid bilayer of the virus envelope and upon UV-irradiation bind to the hydrophobic domains of the envelope glycoproteins. In our earlier study, we have shown that the Venezuelan equine encephalitis virus (VEEV) genomic RNA was also inactivated during the inactivation of the virus with INA.

Findings

In the present study, we evaluated if the RNA inactivation property of INA can be used to inactivate non-enveloped RNA viruses. Encephalomyocarditis virus (EMCV) was used as a model non-enveloped virus. Treatment with INA followed by UV-irradiation resulted in complete inactivation of EMCV. RNA isolated from INA-inactivated EMCV was non-infectious and INA was found to be associated with the viral RNA genome. INA-inactivated EMCV induced robust total antibody response. However binding capacity of INA-inactivated EMCV to neutralizing antibody was inhibited.

Conclusion

This is the first study to show that INA can completely inactivate non-enveloped virus. Our results suggest that the amino acid composition of the neutralizing epitope may interfere with the protective antibody response generated by the INA-inactivated non-enveloped virus.

Keywords

Inactivated EMCV Non-enveloped Iodonaphthyl azide

Findings

Conventional methods of preparing chemically inactivated viral vaccines have several limitations such as denatured immunogens, short-lived immunity and, in some cases incomplete inactivation resulting in disease outbreaks in the vaccinees [1]. We and others have shown earlier that 1,5-iodonaphthyl-azide (INA), a photoactive hydrophobic alkylating compound, can inactivate enveloped viruses by covalently binding to the hydrophobic domains of the viral proteins present in the envelope lipid bilayer [2-11]. We also demonstrated that the infectious positive sense ssRNA viral genome of Venezuelan equine encephalitis virus (VEEV) was inactivated during inactivation by INA [5]. We hypothesize that in addition to the enveloped viruses, INA can also inactivate the non-enveloped viruses by inactivating the viral RNA genome and this property can be used to develop non-enveloped viral vaccine candidates. In this study, we used encephalomyocarditis virus (EMCV) as a non-enveloped virus model. EMCV is a Cardiovirus in the family Picornaviridae and like VEEV has a positive sense ssRNA genome. EMCV infects several animal species like pigs, rodents, cattle, elephants, non-human primates and humans and cause frequent outbreaks in the zoo animals [12-17].

EMCV was inactivated using INA (10 μM, 30 μM, 50 μM and 100 μM dose) and UV-irradiation, as described before [7]. Briefly, 500 μg of EMCV was passed through 30 gauge needle mounted on a 1 ml syringe. Samples were then mixed with desired dose of INA and incubated for 30 min in the dark at room temperature. Samples were centrifuged at 1000 rpm for 1 min to remove precipitated INA crystals. Supernatant containing the virus suspension was transferred to a new 1.5 ml clear wall tube and irradiated for 5 min using 100 W mercury UV lamp (Osram Sylvania Products Inc., Winchester, KY and UVP, LLC, Upland, CA) with intermittent vortexing using the following setup: A clear glass plate filter was placed immediately in front of the lamp to filter out the short wavelength UV and allow transmission of the longer wavelengths of UV light. A water filter was placed at a distance of 6–7 cm from the UV lamp to prevent heating of the samples and the samples were placed 6–7 cm away from the water filter. A similar set up delivered a UV dose of 10 mW/cm2.s in the earlier studies [4,9,11]. The following control and test groups were taken: Control samples: (1) PBS only (UN), (2) EMCV only (E), (3) EMCV plus UV-irradiation (Ei), (4) EMCV plus 1% DMSO (ED), (5) EMCV plus 1% DMSO plus UV-irradiation (EDi). INA was dissolved in DMSO, therefore, the maximum concentration of DMSO (1%) achieved with 100 μM INA dose was used as control. Test samples: (1) EMCV plus INA (at 10 μM, 30 μM, 50 μM and 100 μM doses of INA and referred as EI 10, EI 30, EI 50 and EI 100 , respectively) and (2) EMCV plus INA plus UV-irradiation (referred as EI 10 i, EI 30 i , EI 50 i and EI 100 i, respectively). Inactivation of the virus was assessed by the combined results of cytopathic effect (CPE), virus titer in cell supernatants, and EMCV-3D gene (encoding for the viral polymerase) specific RT-PCR on total cellular RNA isolated from the infected cell (Forward primer- 5′ TCCCGTTTGCGGCAGAAAGATT 3′; Reverse primer- 5′ AAGCGGAACATTGCCACCGAAT 3′).

INA inactivated EMCV and a complete loss of EMCV infectivity was achieved at 50 and 100 μM dose of INA combined with the UV-irradiation (Figure 1). 30 μM INA in combination with UV-irradiation partially inhibited EMCV infectivity. Treatment with INA alone at 50 and 100 μM doses also partially inhibited the infectivity of EMCV (Figure 1A and B). Inhibition of EMCV infectivity by INA alone or in combination with UV-irradiation, in CPE and virus titer assays, may have been observed due to the limit of detection of virus in these assays. Therefore, a more sensitive RT-PCR assay for EMCV 3D-gene was used, which showed that complete inactivation of EMCV occurred only at 50 and 100 μM dose of INA in combination with UV-irradiation (Figure 1C). Data suggests that INA inactivation of EMCV may be dose dependent, but is not conclusive. Partial inhibition of EMCV by INA alone observed in this study was different from our earlier studies with enveloped viruses where no adverse effect of INA alone was observed on VEEV and CHIKV [5-7]. As both EI50i and EI100i showed complete inactivation, only EI100i was used in the remaining experiments.
Figure 1

Inactivation of EMCV by INA. A) L-cells were infected with virus preparations at an MOI = 10. At 72 h post infection, cells were fixed and stained with crystal violet. The wells with live cells are stained in blue. Clear wells indicate cell death due to virus infection. B) Virus titer (represented as TCID50/ml) was measured in the supernatant of L-cells infected with control and test samples. The results are representative of at least 4 replicates. C) EMCV-3D gene specific RT-PCR was done on RNAs isolated from cells infected with controls or test EMCV samples. GAPDH was used as the reference housekeeping gene. UN: Uninfected cells, UD: under the detection limit, UV: Ultraviolet rays.

To evaluate the effect of INA-inactivation on EMCV genome infectivity, RNA was isolated from untreated infectious- EMCV (E-RNA) and EI100i (EI100i-RNA) using the Viral RNA/DNA purification kit (Life Technologies Inc., Carlsbad, CA). L cell monolayers were transfected with 100 ng RNA mixed with 3 μl Fugene HD transfection reagent (Roche Applied Sciences, Indianapolis, IN) and 97 μl optiMEM as per manufacturer’s protocol. Virus replication in the transfected cells was evaluated by EMCV 3D-gene expression using a specific RT-PCR on the RNA isolated from the cells at 48 h post transfection. No virus specific amplification was observed in the cells transfected with EI100i-RNA unlike those transfected with E-RNA (Figure 2A). Similar results were also observed in a parallel experiment, where virus replication was evaluated by plaque assay in the cell supernatants at 72 h post transfection (Figure 2B).
Figure 2

INA binds to the viral RNA and renders it non-infectious in-vitro . (A) L-cells were transfected with RNA isolated from infectious EMCV (E-RNA) or EI100i (EI100i-RNA) or mock transfected. EMCV-3D gene specific RT-PCR was done on the total RNA isolated from cells after 48 h post transfection to test for EMCV replication. (B) Virus replication in cell supernatants was measured by standard plaque assay. No virus replication was detected in the supernatant of the cells transfected with the EI100i-RNA. Virus titer in cells transfected with E-RNA was similar to the samples infected with control live EMCV virus. C) RNA was isolated from EMCV (E-RNA), EMCV treated with 100 μM I125-labeled INA (EI100-RNA), and EMCV treated with 100 μM I125-labeled INA in combination with UV (EI100i-RNA). Co-localization of INA with RNA was tested by overlapping silver staining of RNA (upper panel) with autoradiograph of I125-labeled INA (lower panel). D) RNA isolated from EI100i (EI100i-RNA) was treated with RNase t1 or Proteinase K to test the binding of INA to EMCV RNA.

To evaluate whether INA directly interacts with the viral RNA genome during the inactivation process, autoradiography was performed with the RNA isolated from EMCV inactivated with 100 μM of I125-labeled INA. Virus particles were treated with RNase free DNase (Promega corp, Madison, WI) before RNA isolation to eliminate any cellular DNA contamination. RNA samples (500 ng) were then subjected to electrophoresis on 6% TBE-urea gel followed by silver staining according to the manufacturer’s instructions (Silver stain kit, Life Technologies Inc., Carlsbad, CA). Gel was exposed to the X-ray film to detect I125-labeled INA specific band and its association with the viral RNA. INA specific bands were only obtained and co-localized with RNA isolated from EMCV sample treated with INA in combination with UV-irradiation (EI100i-RNA, Figure 2C). No such co-localization was observed with the RNA isolated from EMCV treated with INA alone (EI100-RNA, Figure 2C). EMCV RNA is present in complex with the VPg protein, which is present at the 5′ end of the viral genome [18]. To check whether INA is binding to the VPg protein or to the viral RNA genome, RNA isolated from the virus preparations were treated with RNase t1 or proteinase K at 37°C for 1 hr. Treatment with proteinase K resulted in slight reduction in the I125 labeled-INA specific band intensity, whereas, treatment with RNase t1 resulted in greater loss in the band intensity (Figure-2D) indicating the association of INA with viral RNA. Taken together, these results suggest that although some of the INA may bind to the viral VPg protein; a larger percentage of INA binds to the viral RNA genome and this binding is dependent on UV-irradiation.

Safety and protective efficacy of EI100i against lethal challenge was also evaluated in-vivo under two pilot studies as described in Additional file 1: Figure S1A & D. All experiments were conducted in accordance with the Guide for the Care and Use of Laboratory Animals (Committee on Care And Use of Laboratory Animals of The Institute of Laboratory Animal Resources, National Research Council, NIH Publication No. 86-23, revised 1996) and approved by the Uniformed Services University of the Health Sciences (USUHS) institutional animal care and use committee (IACUC). Study-1: 4-5 week old male CD-1 mice were immunized intraperitoneally (i.p.) with saline (n = 5) or 108 plaque forming unit (PFU) of EI100i (n = 10) on Day 0 and Day 14. PFU for inactivated virus was extrapolated from the PFU value of the live EMCV stock that was used for the inactivation. Animals were challenged with 108 PFU of infectious EMCV through intra-peritoneal (i.p.) route on Day 28 (Additional file 1: Figure S1A). Study-2: CD-1 male mice (4-5 weeks old) were immunized with saline (n = 4) or 108 PFU of EI100i (n = 6) or EI100i mixed with equal volumes of adjuvant Alhydrogel® (Alum; final Al concentration of 2 mg/ml; Brenntag Biosector, Fredeikssund, Denmark) (n = 6) on Day 0, Day 14 and Day 28. Mice were challenged with 2×107 PFU of virulent EMCV through i.p. route on Day 63 (Additional file 1: Figure S1D). Animals were monitored for clinical signs of disease such as weight loss, ruffled fur, hunched back, lethargy and paralysis and were euthanized when found moribund. All animals that received the immunization with EI100i developed normally without any clinical symptoms of disease and gained weight similar to that of the animals in saline control group (Additional file 1: Figures S1B & E). A robust total IgG response was observed post immunization indicating highly immunogenic nature of EI100i (Additional file 1: Figures S1C & F). Surprisingly, irrespective of the robust antibody response immunization with EI100i failed to protect the animals against infectious EMCV challenge (Additional file 2: Table-S1).

To test if inactivation with INA interfered with the antigenicity of EMCV, binding of EI100i to anti-EMCV antibody was evaluated. Western blot analysis using a polyclonal anti-EMCV antibody (1:100; EMCV antiserum, Catalog#301-MDV, USDA) revealed four major bands corresponding to EMCV structural proteins in the test and the control samples (Figure 3A). Further analysis using a polyclonal neutralizing anti-EMCV antibody (1:50; Catalog#315-MDV, USDA APHIS, NVSL, Ames, IA), however, revealed complete loss of antibody binding capacity of EI100 and EI100i samples (Figure-3B). Reduction in the antibody binding capacity after inactivation with INA has also been reported with enveloped viruses [6,7,11]. INA is known to bind to cysteine molecules in a peptide [2,3]. Neutralizing epitope on the capsid protein, VP1, of EMCV contains 5 cysteine residues [18,19]. We hypothesize that binding of INA to these cysteine residues may have resulted in masking of the protective epitopes present on the surface of EMCV. This would explain the complete loss of binding to the neutralizing antibodies and failure of EI100i to protect against challenge with infectious EMCV. Complete loss of binding of EMCV treated with INA alone (EI100; Figure 3B) was unexpected as INA in absence of UV has not been reported to bind to the viral proteins [2]. This suggests either a non-specific interaction of INA with viral proteins or interaction via an unknown mechanism and will need further evaluation.
Figure 3

Antigenicity of INA-inactivated EMCV. A) Western blot analysis using polyclonal anti-EMCV antibody. B) Western blot analysis using polyclonal neutralizing anti-EMCV antibody.

This is the first study to demonstrate the inactivation of non-enveloped virus by INA and it’s binding to the viral genomic RNA, which was dependent on UV-irradiation. Though the mechanism by which INA binding results in inactivation of viral RNA is not known, it may be possible that INA interferes with the interaction between the viral genomic RNA and the replication complex during the virus replication process. Since, INA seems to inactivate viruses by two independent mechanism i.e., targeting viral envelope proteins [2-4] and viral genomic RNA; this method presents a novel inactivation strategy for developing second generation inactivated virus vaccine candidates for both the enveloped and the non-enveloped viruses. However, its application may be limited by the non-specific interaction of INA with the viral proteins, as observed in this study. Application of INA inactivation method may also be limited for certain viruses where the protective epitopes consist largely of cysteine residues and should be considered while using INA for inactivated viral vaccine development.

Abbreviations

CPE: 

Cytopathic effect

DMSO: 

Dimethyl sulfoxide

EMCV: 

Encephalomyocarditis virus

E: 

EMCV only

Ei: 

EMCV plus UV-irradiation

ED: 

EMCV plus 1% DMSO

EDi: 

EMCV plus 1% DMSO plus UV-irradiation

EI10

EI30, EI50 and EI100: EMCV plus 10 μM, 30 μM, 50 μM and 100 μM dose of INA, respectively

EI10i: 

EI30i, EI50i and EI100i: EMCV plus 10 μM, 30 μM, 50 μM and 100 μM dose of INA, respectively, plus UV-irradiation

E-RNA: 

RNA isolated from EMCV

EI100-RNA: 

RNA isolated from EMCV

EI100i-RNA: 

RNA isolated from EMCV inactivated with 100 μM dose of INA and UV-irradiation

GAPDH: 

Glyceraldehyde 3-phosphate dehydrogenase

IACUC: 

Institutional Animal Care and Use Committee

INA: 

1,5 iodonaphthyl azide

PBS: 

Phosphate buffered saline

PFU: 

Plaque forming unit

RT-PCR: 

Reverse transcription-Polymerase chain reaction

UN: 

Uninfected

USUHS: 

Uniformed Services University of the Health Sciences

UV: 

Ultraviolet

VEEV: 

Venezuelan equine encephalitis virus

Declarations

Acknowledgement

These studies were supported in part by funding from Defense Threat Reduction Agency to USUHS; federal funds from the Frederick National Laboratory for Cancer Research, National Institutes of Health (NIH), under contract HHSN261200800001E; the Intramural Research Program of NIH, Frederick National Lab, Center for Cancer Research, and grants from the National Institutes of Health Intramural AIDS Targeted Antiviral Program (IATAP) and the NIAID Intramural Biodefense Research Program.

Disclaimer

The opinions and the views expressed herein are that of the author(s), and are not necessarily representative of those of the Uniformed Services University of the Health Sciences (USUHS), the National Institutes of Health, the Department of Health and Human Service, the Department of Defense (DOD), the United States Army, Navy; or Air Force, nor does mention of trade names, commercial products or organizations imply endorsement by the US Government.

Authors’ Affiliations

(1)
Department of Pathology, Uniformed Services University of the Health Sciences
(2)
Basic Science Program, Leidos Biomedical Research, Inc., NCI Center for Cancer Research, Frederick National Laboratory for Cancer Research
(3)
Chemical Biology Lab, Center for Cancer Research, National Cancer Institute

References

  1. Brown F. Review of accidents caused by incomplete inactivation of viruses. Dev Biol Stand. 1993;81:103–7.PubMedGoogle Scholar
  2. Bercovici T, Gitler C. 5-[125I]Iodonaphthyl azide, a reagent to determine the penetration of proteins into the lipid bilayer of biological membranes. Biochemistry. 1978;17:1484–9.View ArticlePubMedGoogle Scholar
  3. Hoppe J, Friedl P, Jorgensen BB. [125I]Iodonaphtylazide labeling selectively a cysteine residue in the F0 of the ATP-synthase from E. coli is unsuitable for topographic studies of membrane proteins. FEBS Lett. 1983;160:239–42.View ArticlePubMedGoogle Scholar
  4. Raviv Y, Viard M, Bess Jr JW, Chertova E, Blumenthal R. Inactivation of retroviruses with preservation of structural integrity by targeting the hydrophobic domain of the viral envelope. J Virol. 2005;79:12394–400.View ArticlePubMed CentralPubMedGoogle Scholar
  5. Sharma A, Gupta P, Glass PJ, Parker MD, Maheshwari RK. Safety and protective efficacy of INA-inactivated Venezuelan equine encephalitis virus: implication in vaccine development. Vaccine. 2011;29:953–9.View ArticlePubMedGoogle Scholar
  6. Sharma A, Gupta P, Maheshwari RK. Inactivation of Chikungunya virus by 1,5 iodonapthyl azide. Virol J. 2012;9:301.View ArticlePubMed CentralPubMedGoogle Scholar
  7. Sharma A, Raviv Y, Puri A, Viard M, Blumenthal R, Maheshwari RK. Complete inactivation of Venezuelan equine encephalitis virus by 1,5-iodonaphthylazide. Biochem Biophys Res Commun. 2007;358:392–8.View ArticlePubMedGoogle Scholar
  8. Warfield KL, Swenson DL, Olinger GG, Kalina WV, Viard M, Aitichou M, et al. Ebola virus inactivation with preservation of antigenic and structural integrity by a photoinducible alkylating agent. J Infect Dis. 2007;196 Suppl 2:S276–83.View ArticlePubMedGoogle Scholar
  9. Raviv Y, Blumenthal R, Tompkins SM, Humberd J, Hogan RJ, Viard M. Hydrophobic inactivation of influenza viruses confers preservation of viral structure with enhanced immunogenicity. J Virol. 2008;82:4612–9.View ArticlePubMed CentralPubMedGoogle Scholar
  10. Sagripanti JL, Marschall HJ, Voss L, Hulseweh B. Photochemical inactivation of alpha- and poxviruses. Photochem Photobiol. 2011;87:1369–78.View ArticlePubMedGoogle Scholar
  11. Raviprakash K, Sun P, Raviv Y, Luke T, Martin N, Kochel T. Dengue virus photo-inactivated in presence of 1,5-iodonaphthylazide (INA) or AMT, a psoralen compound (4′-aminomethyl-trioxsalen) is highly immunogenic in mice. Hum Vaccin Immunother. 2013;9:2336–41.View ArticlePubMed CentralPubMedGoogle Scholar
  12. King AMQ, Brown F, Christian P, Hovi T, Hyypiä T, Knowles NJ, et al. Picornaviridae. San Diego: Academic Press New-York; 2000.Google Scholar
  13. Czechowicz J, Huaman JL, Forshey BM, Morrison AC, Castillo R, Huaman A, et al. Prevalence and risk factors for encephalomyocarditis virus infection in Peru. Vector Borne Zoonotic Dis. 2011;11:367–74.View ArticlePubMedGoogle Scholar
  14. Canelli E, Luppi A, Lavazza A, Lelli D, Sozzi E, Martin AM, et al. Encephalomyocarditis virus infection in an Italian zoo. Virol J. 2010;7:64.View ArticlePubMed CentralPubMedGoogle Scholar
  15. Blinkova O, Kapoor A, Victoria J, Jones M, Wolfe N, Naeem A, et al. Cardioviruses are genetically diverse and cause common enteric infections in South Asian children. J Virol. 2009;83:4631–41.View ArticlePubMed CentralPubMedGoogle Scholar
  16. Pritchard AE, Strom T, Lipton HL. Nucleotide sequence identifies Vilyuisk virus as a divergent Theiler’s virus. Virology. 1992;191:469–72.View ArticlePubMedGoogle Scholar
  17. Zoll J, Erkens Hulshof S, Lanke K, Verduyn Lunel F, Melchers WJ, Schoondermark-van de Ven E, et al. Saffold virus -a human Theiler’s-like cardiovirus, is ubiquitous and causes infection early in life. PLoS Pathog. 2009;5:e1000416.View ArticlePubMed CentralPubMedGoogle Scholar
  18. Chen Z, Guo X, Ge X, Jia H, Yang H. Protective immune response in mice vaccinated with a recombinant adenovirus containing capsid precursor polypeptide P1, nonstructural protein 2A and 3C protease genes (P12A3C) of encephalomyocarditis virus. Vaccine. 2008;26:573–80.View ArticlePubMedGoogle Scholar
  19. Kobasa D, Mulvey M, Lee JS, Scraba DG. Characterization of Mengo virus neutralization epitopes II. Infection of mice with an attenuated virus. Virology. 1995;214:118–27.View ArticlePubMedGoogle Scholar

Copyright

© Gupta et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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