Table 1 Genetic subtypes in the gag p24 env V3–V5 and pol (Pr and RT) regions
gag subtype | N | env subtype | N | pol subtype | N |
|---|---|---|---|---|---|
A | 1 | A | 1 | A | 1 |
A | 1 | A | 1 | A3/A | 1 |
A | 1 | A | 1 | G/A/G/A | 1 |
A | 1 | A | 1 | U/K | 1 |
A | 1 | A | 1 | CRF37/A/CRF37 | 1 |
A | 1 | CRF01 | 1 | U/A | 1 |
A | 1 | J | 1 | CRF37/U (GJ) | 1 |
A3 | 1 | CRF06 | 1 | CRF02/A | 1 |
CRF05 | 1 | F1 | 1 | CRF05 | 1 |
CRF18 | 1 | A | 1 | A/CRF37 | 1 |
CRF18 | 1 | CRF18 | 1 | CRF18 | 1 |
CRF18 | 1 | CRF18 | 1 | G/A | 1 |
CRF18 | 1 | U | 1 | G/H/U | 1 |
CRF37 | 1 | A | 1 | CRF37/A/CRF37 | 2 |
CRF37 | 1 | CRF19 | 1 | CRF37 | 1 |
CRF37 | 1 | U | 1 | CRF37/A/CRF37 | 1 |
D (D and D’) | 5 | D | 6 | D | 4 |
D (D and D’) | 1 | D | 1 | U | 1 |
D (D and D’) | 1 | D | 1 | U/D | 1 |
D (D and D’) | 1 | U | 1 | D | 1 |
F2 | 1 | ND | 1 | F2/F (F not F1, not F2) | 1 |
G | 1 | A | 1 | G | 1 |
G | 1 | CRF06 | 1 | G | 1 |
G | 1 | G | 1 | G | 3 |
G | 1 | U | 1 | G/H | 1 |
G | 1 | H | 1 | G/H | 1 |
G | 1 | ND | 1 | G/U/G | 1 |
G | 1 | ND | 1 | J | 1 |
G | 1 | ND | 1 | A/CRF37 | 1 |
G | 1 | ND | 1 | G | 1 |
G | 1 | ND | 1 | U/K | 1 |
H | 1 | H | 1 | H | 1 |
J | 1 | J | 1 | G | 1 |
J | 1 | U | 1 | J/G | 1 |
J | 1 | ND | 1 | G | 1 |
ND | 3 | A | 1 | CRF13 | 1 |
ND | 1 | C | 1 | U/A | 1 |
ND | 1 | D | 1 | J | 1 |
ND | 1 | ND | 2 | D | 1 |
ND | 1 | ND | 1 | G | 1 |
ND | 1 | ND | 1 | G/U/G | 1 |
U | 1 | F1 | 1 | H/F | 1 |
U | 1 | A | 1 | U/K | 1 |
U* | 1 | A | 1 | U/K | 1 |