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Table 2 Salmonella Typhimurium strains belonging to different phage types show identical CRISPR/CRISPOL type

From: Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?

Phage type Isolate ID (source) Lab Accession Number CRISPR type CRISPOL type Reference
CRISPR/CRISPOL type among phage types DT8 and DT30 of S. Typhimurium
DT8 M18-2003 (Control DT8) NSSLRL aTraces-0jdDfGp (PRJEB18673) 1069 6 This study
DT8 DT8 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0CerOby (ERS007592) 1069 6 [2]
DT8 S81-848 (Veterinary isolate) Institut Pasteur Traces-0PArkjM 1069 6 Enterobase
DT8 MS150057 (Clinical isolate) NSSLRL Traces-0xVpmwI 2260 708 Enterobase
DT30 MS57 (Control DT30) NSSLRL aTraces-0aYyWix (ERS640854) 812 250 [8]
DT8 M12-2001 (Control DT8) NSSLRL aTraces-0Jyulvx (PRJEB18673) 812 250 This study
DT8 M15-2006 (Control DT8) NSSLRL aTraces-0WxCKWi (PRJEB18673) 812 250 This study
DT8 MS32 (Control DT8) NSSLRL aTraces-0dPdGho (PRJEB18673) 812 250 This study
CRISPR/CRISPOL type among phage types DT104, DT104b and U302 of S. Typhimurium
DT104b MS130531 (Control DT104b) NSSLRL aTraces-0ptnSId (PRJEB18673) 12 21 This study
U302 M18-2006 (Control U302) NSSLRL aTraces-0rRUdtU (PRJEB18673) 12 21 This study
DT104 TM75-339 (No data) Institut Pasteur Traces-0dpLsNp 12 21 Enterobase
DT104 MS150098 (Clinical isolate) NSSLRL Traces-0VNfjhC 12 21 Enterobase
DT104 MS150095 (Clinical isolate) NSSLRL Traces-0ohRXMQ 12 21 Enterobase
DT104b MS150159 (Clinical isolate) NSSLRL Traces-0mdEaBO 12 21 Enterobase
DT104b MS150253 (Clinical isolate) NSSLRL Traces-0VfHkWp 7556 315 Enterobase
DT104 MS150005 (Clinical isolate) NSSLRL Traces-0ehJIGG 5000 168 Enterobase
CRISPR/CRISPOL type among phage types DT99, DT56, U319 and DT40 of S. Typhimurium
DT99 DT99 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0fQeupq (ERS007596) 7433 14 [2]
DT56 DT56 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0WirVGQ (ERS007588) 7433 14 [2]
U319 U319 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0nXusuL (ERS007613) 7433 14 [2]
DT40 S05-2864 (Clinical isolate) Institut Pasteur Traces-0PxGcXB 7433 14 Enterobase
DT40 M20-2006 (Control isolate) NSSLRL aTraces-0rGCwUc (PRJEB18673) 9520 1637 This study
DT40 M19-2003 (Control isolate) NSSLRL aTraces-0nxmoMB (PRJEB18673) 9519 1636 This study
DT40 CQ 40 Institut Pasteur Traces-0LSHwEV 745 18 Enterobase
CRISPR/CRISPOL type among phage types DT120, DT7a, DT193 and untypable strains of S. Typhimurium
DT120 S02-3776 (Clinical isolate) Institut Pasteur Traces-0yQDdlW 9921 1759 Enterobase
DT120 07_2198 (No Data) Institut Pasteur Traces-0pKTfCi 9911 1753 Enterobase
DT120 M16-2000 (Control DT120) NSSLRL aTraces-0fEcWgz (PRJEB18673) 9510 1428 Enterobase
DT7a MS120840 (Control DT7a) NSSLRL aTraces-0psYyDm (PRJEB18673) 9510 1428 Enterobase
DT120 S/20160374 (Clinical isolate) SSSCDRL Traces-0CeRVgg 322 1 Enterobase
DT120 S/20160407 (Clinical isolate) SSSCDRL Traces-0agMeAc 322 1 Enterobase
DT20a MS150110 (Clinical isolate) NSSLRL Traces-0isgxxB 322 1 Enterobase
Untypable MS150097 (Clinical isolate) NSSLRL Traces-0VSlIab 322 1 Enterobase
DT193 MS150007 (Clinical isolate) NSSLRL Traces-0vpTyIh 322 1 Enterobase
DT193 MS150252 (Clinical isolate) NSSLRL Traces-0WAKQQZ 317 2 Enterobase
CRISPR/CRISPOL type among phage types DT12, DT3 and DT193a of S. Typhimurium
DT12 DT12 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0kmZJki (ERS007564) 5268 19 [2]
DT12 S02-2651 (Clinical isolate) Institut Pasteur Traces-0FbQprS 774 46 Enterobase
DT3 S81-482 (Clinical isolate) Institut Pasteur Traces-0pUCktc 5268 19 Enterobase
DT3 S81-531 (Veterinary isolate) Institut Pasteur Traces-0pGWuNa 539 13 Enterobase
DT193a MS120454 (Clinical isolate) NSSLRL Traces-0hfCzzz 774 46 Enterobase
CRISPR/CRISPOL type among phage types DT135, DT191a and RDNC strains of S. Typhimurium
DT135 DT135 (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0xEkcLV
ERS007567
5753 396 [2]
DT135 MS150100 (Clinical isolate) NSSLRL Traces-0fqzVBN 3247 66 Enterobase
DT135 MS150112 (Clinical isolate) NSSLRL Traces-0TpmttL 91 4 Enterobase
DT135 MS150180 (Clinical isolate) NSSLRL Traces-0FksMUv 91 4 Enterobase
DT191a DT191a (Clinical isolate) Wellcome Trust Sanger Institute bTraces-0KhAoGt
ERS007574
91 4 [2]
RDNC MS150102 (Clinical isolate) NSSLRL Traces-0bmnIRV 91 4 Enterobase
RDNC MS150230 (Clinical isolate) NSSLRL Traces-0vTHNcg 91 4 Enterobase
RDNC MS150009 (Clinical isolate) NSSLRL Traces-0Zipaoz 9404 1614 Enterobase
  1. aAccession Numbers in Enterobase of control phage types of S. Typhimurium sequenced in this study. The Accession Number in ENA is also provided
  2. bAccession Numbers in Enterobase of clinical isolates of S. Typhimurium used in this study. The Accession Number in ENA is also provided