Table 2 Salmonella Typhimurium strains belonging to different phage types show identical CRISPR/CRISPOL type
From: Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?
Phage type | Isolate ID (source) | Lab | Accession Number | CRISPR type | CRISPOL type | Reference |
|---|---|---|---|---|---|---|
CRISPR/CRISPOL type among phage types DT8 and DT30 of S. Typhimurium | ||||||
DT8 | M18-2003 (Control DT8) | NSSLRL | aTraces-0jdDfGp (PRJEB18673) | 1069 | 6 | This study |
DT8 | DT8 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0CerOby (ERS007592) | 1069 | 6 | [2] |
DT8 | S81-848 (Veterinary isolate) | Institut Pasteur | Traces-0PArkjM | 1069 | 6 | Enterobase |
DT8 | MS150057 (Clinical isolate) | NSSLRL | Traces-0xVpmwI | 2260 | 708 | Enterobase |
DT30 | MS57 (Control DT30) | NSSLRL | aTraces-0aYyWix (ERS640854) | 812 | 250 | [8] |
DT8 | M12-2001 (Control DT8) | NSSLRL | aTraces-0Jyulvx (PRJEB18673) | 812 | 250 | This study |
DT8 | M15-2006 (Control DT8) | NSSLRL | aTraces-0WxCKWi (PRJEB18673) | 812 | 250 | This study |
DT8 | MS32 (Control DT8) | NSSLRL | aTraces-0dPdGho (PRJEB18673) | 812 | 250 | This study |
CRISPR/CRISPOL type among phage types DT104, DT104b and U302 of S. Typhimurium | ||||||
DT104b | MS130531 (Control DT104b) | NSSLRL | aTraces-0ptnSId (PRJEB18673) | 12 | 21 | This study |
U302 | M18-2006 (Control U302) | NSSLRL | aTraces-0rRUdtU (PRJEB18673) | 12 | 21 | This study |
DT104 | TM75-339 (No data) | Institut Pasteur | Traces-0dpLsNp | 12 | 21 | Enterobase |
DT104 | MS150098 (Clinical isolate) | NSSLRL | Traces-0VNfjhC | 12 | 21 | Enterobase |
DT104 | MS150095 (Clinical isolate) | NSSLRL | Traces-0ohRXMQ | 12 | 21 | Enterobase |
DT104b | MS150159 (Clinical isolate) | NSSLRL | Traces-0mdEaBO | 12 | 21 | Enterobase |
DT104b | MS150253 (Clinical isolate) | NSSLRL | Traces-0VfHkWp | 7556 | 315 | Enterobase |
DT104 | MS150005 (Clinical isolate) | NSSLRL | Traces-0ehJIGG | 5000 | 168 | Enterobase |
CRISPR/CRISPOL type among phage types DT99, DT56, U319 and DT40 of S. Typhimurium | ||||||
DT99 | DT99 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0fQeupq (ERS007596) | 7433 | 14 | [2] |
DT56 | DT56 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0WirVGQ (ERS007588) | 7433 | 14 | [2] |
U319 | U319 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0nXusuL (ERS007613) | 7433 | 14 | [2] |
DT40 | S05-2864 (Clinical isolate) | Institut Pasteur | Traces-0PxGcXB | 7433 | 14 | Enterobase |
DT40 | M20-2006 (Control isolate) | NSSLRL | aTraces-0rGCwUc (PRJEB18673) | 9520 | 1637 | This study |
DT40 | M19-2003 (Control isolate) | NSSLRL | aTraces-0nxmoMB (PRJEB18673) | 9519 | 1636 | This study |
DT40 | CQ 40 | Institut Pasteur | Traces-0LSHwEV | 745 | 18 | Enterobase |
CRISPR/CRISPOL type among phage types DT120, DT7a, DT193 and untypable strains of S. Typhimurium | ||||||
DT120 | S02-3776 (Clinical isolate) | Institut Pasteur | Traces-0yQDdlW | 9921 | 1759 | Enterobase |
DT120 | 07_2198 (No Data) | Institut Pasteur | Traces-0pKTfCi | 9911 | 1753 | Enterobase |
DT120 | M16-2000 (Control DT120) | NSSLRL | aTraces-0fEcWgz (PRJEB18673) | 9510 | 1428 | Enterobase |
DT7a | MS120840 (Control DT7a) | NSSLRL | aTraces-0psYyDm (PRJEB18673) | 9510 | 1428 | Enterobase |
DT120 | S/20160374 (Clinical isolate) | SSSCDRL | Traces-0CeRVgg | 322 | 1 | Enterobase |
DT120 | S/20160407 (Clinical isolate) | SSSCDRL | Traces-0agMeAc | 322 | 1 | Enterobase |
DT20a | MS150110 (Clinical isolate) | NSSLRL | Traces-0isgxxB | 322 | 1 | Enterobase |
Untypable | MS150097 (Clinical isolate) | NSSLRL | Traces-0VSlIab | 322 | 1 | Enterobase |
DT193 | MS150007 (Clinical isolate) | NSSLRL | Traces-0vpTyIh | 322 | 1 | Enterobase |
DT193 | MS150252 (Clinical isolate) | NSSLRL | Traces-0WAKQQZ | 317 | 2 | Enterobase |
CRISPR/CRISPOL type among phage types DT12, DT3 and DT193a of S. Typhimurium | ||||||
DT12 | DT12 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0kmZJki (ERS007564) | 5268 | 19 | [2] |
DT12 | S02-2651 (Clinical isolate) | Institut Pasteur | Traces-0FbQprS | 774 | 46 | Enterobase |
DT3 | S81-482 (Clinical isolate) | Institut Pasteur | Traces-0pUCktc | 5268 | 19 | Enterobase |
DT3 | S81-531 (Veterinary isolate) | Institut Pasteur | Traces-0pGWuNa | 539 | 13 | Enterobase |
DT193a | MS120454 (Clinical isolate) | NSSLRL | Traces-0hfCzzz | 774 | 46 | Enterobase |
CRISPR/CRISPOL type among phage types DT135, DT191a and RDNC strains of S. Typhimurium | ||||||
DT135 | DT135 (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0xEkcLV ERS007567 | 5753 | 396 | [2] |
DT135 | MS150100 (Clinical isolate) | NSSLRL | Traces-0fqzVBN | 3247 | 66 | Enterobase |
DT135 | MS150112 (Clinical isolate) | NSSLRL | Traces-0TpmttL | 91 | 4 | Enterobase |
DT135 | MS150180 (Clinical isolate) | NSSLRL | Traces-0FksMUv | 91 | 4 | Enterobase |
DT191a | DT191a (Clinical isolate) | Wellcome Trust Sanger Institute | bTraces-0KhAoGt ERS007574 | 91 | 4 | [2] |
RDNC | MS150102 (Clinical isolate) | NSSLRL | Traces-0bmnIRV | 91 | 4 | Enterobase |
RDNC | MS150230 (Clinical isolate) | NSSLRL | Traces-0vTHNcg | 91 | 4 | Enterobase |
RDNC | MS150009 (Clinical isolate) | NSSLRL | Traces-0Zipaoz | 9404 | 1614 | Enterobase |