- Research note
- Open Access
Emergence of G12 and G9 rotavirus genotypes in the Central African Republic, January 2014 to February 2016
- Ulrich Aymard Ekomi Moure†1,
- Virginie Banga-Mingo†2,
- Jean Chrysostom Gody3,
- Jason M. Mwenda4,
- Jean Fandema2,
- Diane Waku-Kouomou5,
- Casimir Manengu6, 7,
- Thomas D’Aquin Koyazegbe8, 9,
- Mathew D. Esona5,
- Michael D. Bowen5 and
- Ionela Gouandijka-Vasilache2Email authorView ORCID ID profile
© The Author(s) 2018
- Received: 2 July 2017
- Accepted: 29 December 2017
- Published: 5 January 2018
Rotavirus gastroenteritis is a major cause of death among children under 5 years globally. A rotavirus gastroenteritis surveillance program started in October 2011 in the Central African Republic (CAR) with the Surveillance Epidémiologique en Afrique Centrale (SURVAC) project. We present here genotyping results showing the emergence of G9 and G12 genotypes in Central African Republic.
Among 222 children hospitalized with acute gastroenteritis who had a stool sample collected at the sentinel site, Complexe Pédiatrique de Bangui (CPB), Bangui, Central African Republic, 100 (45%) were positive for rotavirus between January 2014 and February 2016. During this period the most common rotavirus strains were G1P (37%), G12P (27%) and G9P (18%).
Rotavirus diarrhea is widespread with approximately 215,000 children less than 5 years of age dying each year due to severe dehydration caused by rotavirus . Rotaviruses belong (RV) to the family Reoviridae, and the rotavirus genome consists of 11 double-stranded RNA gene segments that encode six structural (VP) and six non-structural proteins (NSP). Based on the two genes that encode the outer capsid proteins, VP4 (P-type) and VP7 (G-type), a widely used binary classification system was established for RV-A . To date, at least 35 G and 50 P genotypes have been recognized in both mammalian and avian species. So far, 6 genotypes (G1P, G2P, G3P, G4P, G9P, and G12P) are currently the most important genotypes in humans worldwide and are associated with 80–90% of the RVA associated disease burden [3–5]. In Africa and sub-Saharan Africa in particular there is a greater genetic diversity and emergence of new and unusual strains . In addition to the 6 common strains mentioned above, rotavirus strains with unusual combination, such as G8P, G3P, G8P, G2P as well as high levels of mixed infections and strains that cannot be assigned any specific genotype have been reported in sub-Saharan Africa .
In 2009, WHO recommended the introduction of rotavirus vaccine in all countries . In the Central African Republic, the sentinel surveillance of rotavirus gastroenteritis was established in 2011 by the Ministry of Health, with the support of the Surveillance Epidémiologique en Afrique Centrale (SURVAC) Project . The main objective of the project was to assess the burden of rotavirus gastroenteritis and identify rotavirus strains circulating in CAR before the introduction of a rotavirus vaccine which was initially scheduled for 2017. The SURVAC project completed in 2014 but the surveillance continues with support from the WHO, the Institut Pasteur de Bangui (IPB) and The Centers for Diseases Control and prevention (CDC). The surveillance results between 2011 and 2013 have been published . We present here the rotavirus surveillance results for the period January 2014 to February 2016.
Stool samples were collected from children less than 5 years of age who met the WHO rotavirus gastroenteritis case definition at the sentinel site, the Complex Pédiatrique de Bangui (CPB), in the capital of CAR . CPB is the only pediatric hospital of the country where, all severe diarrhea cases originated from Bangui and surroundings are referred.
At the sentinel site laboratory, the samples were first screened for group A rotavirus antigen by enzyme immunoassay (EIA) using the ProSpecT™ Rotavirus Microplate Assay (Oxoid, Ltd., Basingstoke, Hampshire, UK). Aliquots of all the samples were then stored at − 20 °C before transport to the Institut Pasteur de Bangui where results were confirmed by EIA using the same kit and genotyping assays performed as previously described . Briefly, RNA extracts were subjected to multiplex semi-nested reverse transcription polymerase chain reaction (RT-PCR). Two genes; VP7 (896 bp) and VP4 (876 bp) were reverse-transcribed and amplified with primer pairs 9Con1-L/VP7-R and Con3/Con2, respectively [13, 14]. Reverse transcription of double strand RNA (dsRNA) was carried out with the OneStep RT-PCR Kit (Qiagen, Inc., Valencia, CA USA). After a 5 min denaturation at 97 °C, the RNA was mixed with kit reagents and incubated at 42 °C for 30 min to obtain complementary DNA (cDNA), immediately followed by the PCR reaction (30 cycles: 94 °C for 30 s; 42 °C for 30 s, 72 °C for 45 s; one cycle at 72 °C for 7 min). These first round RT-PCR products then were used in a semi-nested PCR (30 cycles, 94 °C for 45 s, 42 °C for 30 s 72 °C for 1 min; and 1 cycle at 72 °C for 7 min) to identify G types (G1, G2, G3, G4, G9 and G12) and P types (P, P, P) [13, 14]. All PCR products were analyzed by electrophoresis in 2% agarose gels containing Gel Red (Biotium) and visualized under UV illumination. Sample of RNA extracts were sent to CDC for genotyping quality control and sequencing confirmation.
Results and discussion
Annual breakdown of stool samples tested for the presence of Rotavirus antigens by EIA (ProSpecT™) at Insttitut Pasteur de Bangui, Central African Republic (CAR), January 2014 to February 2016
Rota positive (%)
Rota negative (%)
Genotyping data showed that genotypes G1P, G12P and G9P were the most common rotavirus strains circulating in Bangui during the study period. The detection of G12 and G9 strains contributes to the body of evidence that these genotypes are becoming increasingly dominant on the African continent and worldwide [15, 16, 21]. Currently, rotavirus vaccination has not been introduced into CAR; the introduction of Rotarix vaccine has been rescheduled for 2018. Rotarix vaccine has been shown to provide a good level of protection against severe rotavirus gastroenteritis in multiple African countries . This vaccine is derived from a genotype G1P strain but induces immunity against both homotypic and heterotypic rotavirus strains . We therefore are expecting a drop in the number of gastroenteritis cases due to rotavirus infection after the introduction of the Rotarix vaccine . Continued rotavirus surveillance is necessary to monitor the impact of the vaccine on the overall number of hospitalizations for severe gastroenteritis and for the emergence of new genotypes against which the available rotavirus vaccines may be less effective .
The study limitations are linked to the fact that CAR has only one sentinel site and did not reach the WHO recommendation to collect and test 250 samples per year. This is mainly due to the military and political problems that CAR has been experiencing since 2013.
All authors read and approved the manuscript before submission. UAEM, VBM and JF performed the EIA and genotyping, contributed in data analysis and writing of the article; GIV coordinated the project at IPB and was a major contributor in writing the manuscript; DWK, MDE and MDB performed the RT-PCR quality control and sequencing and were major contributors in writing the manuscript; JCG, JMM, CM and TAK coordinated the rotavirus surveillance and contributed to writing the manuscript. All authors read and approved the final manuscript.
This work was conducted with the technical guidance of SURVAC project, WHO and CDC.
Disclaimer: The findings and conclusions in this report are those of the author(s) and do not necessarily represent the official position of the Centers for Disease Control and Prevention. Names of specific vendors, manufacturers, or products are included for public health and informational purposes; inclusion does not imply endorsement of the vendors, manufacturers, or products by the Centers for Disease Control and Prevention or the US Department of Health and Human Services or World Health Organization.
The authors declare that they have no competing interests.
Availability of data and materials
The datasets generated and/or analyzed during the current study are available from the corresponding author on reasonable request.
Consent for publication
Ethics approval and consent to participate
The Rotavirus Gastroenteritis surveillance program is a Public Health program ethically approved by the expert committee for Integrated diseases surveillance of the Ministry of Health in CAR (Arrété No. 0277/MSPP/CAB/DGSPP/DMPM/SMEE du 05 Août 2002) it is a routine surveillance activity and genotyping is part it. The ethical committee in CAR is “Comité Scientifique Chargé De La Validation Des Protocoles D’étude Et Des Résultats” (Scientific comite in charge of validation of studies’s protocols and results) of the University of Bangui) . It stated that for all MoH surveillance programs supported by partners a consent to participate is not required.
This study was performed with the support of SURVAC project (consumables and reagents, 2014), WHO (consumables and reagents, 2015 and 2016) and CDC (RT-PCR Quality control and sequencing).
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