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Cross sectional study to assess the accuracy of electronic health record data to identify patients in need of lung cancer screening
BMC Research Notes volume 11, Article number: 14 (2018)
Lung cancer is the leading cause of cancer death in the United States [Siegel et al. in CA Cancer J Clin 66:7–30, 1]. However, evidence from clinical trials indicates that annual low-dose computed tomography screening reduces lung cancer mortality [Humphrey et al. in Ann Intern Med 159:411–420, 2]. The objective of this study is to report results of a study designed to assess the sensitivity, specificity, and positive and negative predictive value of an electronic health record (EHR) query in comparison to patient self-report, to identify patients who may benefit from lung cancer screening. Cross sectional study comparing patient self report to EHR derived assessment of tobacco status and need for lung cancer screening. We invited 200 current or former smokers, ages 55–80 to complete a brief paper survey. 26 responded and 24 were included in the analysis.
For 30% of respondents, there was not adequate EHR data to make a lung cancer screening determination. Compared to patient self-report, EHR derived data has a 67% sensitivity and 82% specificity for identifying patients that meet criteria for lung cancer screening. While the degree of accuracy may be insufficient to make a final lung cancer screening determination, EHR data may be useful in prompting clinicians to initiate conversations with patients in regards to lung cancer screening.
Lung cancer is the leading cause of cancer death in the United States . However, evidence from clinical trials indicates that annual low-dose computed tomography (LDCT) screening reduces lung cancer mortality . The U.S. Preventive Services Task Force (USPSTF) recommends annual LDCT screening for patients ages 55–80 who have a 30-pack year smoking history and either currently smoke or have quit smoking in the past 15 years .
The widespread adoption of electronic health records (EHRs) by primary care providers and health systems, and meaningful use incentives, which encourage using the EHR to document patients’ tobacco status, create opportunities to implement EHR-based clinical decision support tools to promote appropriate lung cancer screening [4,5,6,7]. Systematic EHR data queries can also be used to identify populations of patients that may benefit from lung cancer screening.
While the majority of primary care providers routinely document tobacco use status in the EHR, the frequency and accuracy of additional tobacco status details, such as amount smoked and years smoked, are ambiguous [8, 9]. The objective of this study is to assess the sensitivity, specificity, and positive and negative predictive value of an EHR query in comparison to patient self-report, to identify patients who may benefit from lung cancer screening based on the published USPSTF screening recommendations.
This study was conducted in a large, community-based multispecialty healthcare system in the Pacific Northwest. Approximately 55% of patients are insured through Medicare or Medicaid, 40% commercial insurance, and 5% are self-pay. All study procedures were reviewed and approved by the Human Subjects Institutional Review Board.
From the shared EHR system, we identified patients ages 55–80 who had been seen at primary care clinics between 5/1/13 and 4/30/15 and for whom the physician had recorded smoking status as current or former. We limited the initial inclusion criteria to current or former smokers because the goal of the study was to assess the accuracy of smoking status documentation for the indication of lung cancer screening, and non-smokers would not be eligible for lung cancer screening. We randomly sampled 200 individuals for invitation to participate. We extracted data from Epic (Verona, Wisconsin) Enterprise Data Warehouse. Manipulation and sampling was performed in the R statistical computing environment (Vienna, Austria). To all 200 patients, we mailed a study information sheet, informed consent form and a six-question, single-page paper questionnaire. Patients were invited to complete the questionnaire and informed consent paperwork and return them with the enclosed self addressed, stamped envelope. Patients were offered a $5 Starbucks gift card for completing the survey and consent document. The EHR smoking status, packs per day, years smoked and start/quit dates (when available) were linked at the patient level for patients with completed surveys and consent paperwork. All data were de-identified and securely transferred to the University of Washington for analysis and interpretation.
From information on the paper survey, a current smoker was defined as anyone who answered “yes” to the question regarding smoking now. Anyone who answered “no” to the question about smoking now, but “yes” to smoking in the past was defined as a former smoker. From the EHR, structured data fields on tobacco status (categorized as current/former/never) were used.
Years smoked was calculated by subtracting the year they began smoking from the year they quit smoking. If they were a current smoker, the year they began smoking was subtracted from 2015, the year the data was collected. From the EHR we obtained available data on the number of years the patient had smoked.
A pack-year is defined as 20 cigarettes (a typical pack) smoked every day for 1 year. From the paper survey, pack-years were calculated by multiplying the packs per day by the number of years smoked. From the EHR, we obtained data from the “packs per day” data field and multiplied this number by the number in the “years smoked” field to calculate pack-years.
Lung cancer screening
For both paper survey data and EHR data, patients with a 30 + pack-year smoking history who were current smokers or who quit smoking between 2000 and 2015 were identified as eligible for lung cancer screening.
We calculated frequencies of responses to all questions. We calculated the sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) for EHR data, using patient self-reports as the comparison. We conducted all analyses using Stata 14.1.
Of the 200 patients invited to participate, 26 responded (13%). Two patients returned incomplete surveys, which left 24 participants remaining in this analysis.
Half of the participants were current smokers and half were former smokers (Table 1). Compared to participant self-report, fewer patients were categorized by the EHR data as having smoked ≥ 30 years (63% vs. 29%). Based on self-report, 46% of patients were eligible for lung cancer screening, compared to only 25% of participants based on EHR data. Overall, 83% of respondents believed they should receive lung cancer screening.
Only the 17 patients with adequate EHR data to assess lung cancer screening need were included in the analysis to assess agreement between EHR and self-report.). The PPV of the EHR data was 66.67%, and the NPV was 81.82% (Table 2).
In this pilot study, we found that EHR data had a 66.7% PPV and 81.8% NPV for identifying patients eligible for lung cancer screening. In this sample, there was inadequate information in the EHR to determine the need for lung cancer screening for almost one-third of the participants. Missing data remains a significant problem when conducting research with EHR systems . Strategies to improve documentation of tobacco use in EHRs include evidence-based prompts to guide medical assistants to identify smokers and remind clinicians to deliver tobacco cessation recommendations [11, 12]. Similar to our reported sensitivity and specificity, the reported sensitivity of EHR data for identifying patients who have completed cancer screening tests ranges from 55% for colorectal cancer to 96% for cervical cancer . The results of this pilot study are useful for future work to estimate necessary sample size and recruitment populations for efforts to implement and evaluate lung cancer screening in healthcare systems. While the degree of accuracy in EHR data may be insufficient to make a final lung cancer screening determination, EHR data may be useful in prompting clinicians to initiate conversations with patients in regards to lung cancer screening.
This study was conducted single health system and included a small number of participants, which limits the generalizability of our findings. Our initial sample included only adults who had EHR evidence of current or former smoking. Thus, we are not able to estimate the prevalence in a health system population of patients who may meet eligibility for lung cancer screening. Future work to include all patients age 55–80 which would allow one to assess the accuracy of smoking status overall as well as the proportion of a health system population in need of lung cancer screening, both important considerations when planning large scale lung cancer screening programs. Our study also used patient self-report as the standard for assessing tobacco status and individuals tend to underreport tobacco use. More accurate methods of assessing tobacco use, such as measurement of exhaled carbon monoxide, may be difficult to implement in routine healthcare settings and only self report can establish non-recent tobacco history, such as for former smokers . Efforts to improve the accuracy of years smoked and the accuracy and frequency of documentation of packs per day smoked would improve the overall accuracy of EHR-derived lung cancer screening recommendations.
low dose computed tomography
electronic health record
United States Preventive Services Task Force
positive predictive value
negative predictive value
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AC, developed the study protocol, designed the analysis, interpreted the results. BF—collected the data, cleaned and deidentified the data, transferred the data for analysis. MS—conducted analyses and prepared results tables, SCM—reviewed and interpreted results. All authors read and approved the final manuscript.
We gratefully acknowledge Victoria Duan for her professional editing of this manuscript.
The authors declare that they have no competing interests.
Availability of data and materials
The datasets used and analyzed during the current study are available from the corresponding author on reasonable request.
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Ethics approval and consent to participate
This study was reviewed and approved by the Multicare Institute for Research and Innovation Institutional Review Board. All research subjects completed written informed consent prior to participation.
This publication was supported by the National Center For Advancing Translational Sciences of the National Institutes of Health under Award Number UL1TR000423. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
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Cole, A.M., Pflugeisen, B., Schwartz, M.R. et al. Cross sectional study to assess the accuracy of electronic health record data to identify patients in need of lung cancer screening. BMC Res Notes 11, 14 (2018). https://doi.org/10.1186/s13104-018-3124-0
- Electronic health records
- Lung cancer
- Cancer screening
- Primary care