Skip to main content

Ocular bacterial infections and antibiotic resistance patterns in patients attending Gondar Teaching Hospital, Northwest Ethiopia



Empirical selections of antimicrobial therapy based on clinical observations are common clinical practices in Ethiopia. This study identified common external ocular infections and determined antibiotic susceptibility testing in northwest Ethiopia.


Among 210 patients studied, conjunctivitis 32.9%(69), blepharitis 26.7%(56), dacryocystitis 14.8%(51), blepharoconjunctivitis 11.9%(25), and trauma 10.0%(21) were the most common external ocular infections. Pathogenic bacteria were isolated among 62.4%(131) cases. The distributions of bacteria detected in conjunctivitis, dacryocystitis, and blepharitis patients were 32.8%(43), 23.7%(31), and 16.0%(21), respectively. The most prevalent isolates were coagulase negative Staphylococci; 27.5%(36), S. aureus; 26.7%(35), Pseudomonas species; 10.7%(14), and E. coli; 7.6%(10). Tetracycline, amoxicillin, chloramphenicol, ampicillin, and nalidic acid showed resistance to bacterial isolates with a respective prevalence of 35.9%(47), 32.1%(42), 26.2%(34), 25.2%(33), and 23.7%(31). Multi-drug resistance patterns to the commonly prescribed antibiotics tested was 20.6%(27), 18.3%(24), 17.6%(23), 5.3%(7), and 4.6%(6) to two, three, four, five, and six antibiotics, respectively. Overall, the multi-drug resistance prevalence rate was 66.4%(87). This study confirmed diverse types of external ocular manifestations associated with bacterial infections with wide ranges of antibiotic resistant phenotypes. Thus, combining clinical information, bacteriological analysis, and antimicrobial susceptibility tests are useful for making an evidence-based selection of antibiotics therapy.


Ocular infections are common in most part of the developing world. In particular, conjunctivitis, keratitis, endophthalmitis, blepharitis, orbital cellulitis, canaliculitis, cellulitis, dacryocystitis, and the likes are common ocular infections caused by bacteria [1, 2]. For effective management of such infections, knowledge of the specific etiology and the structure (s) of the eye affected must be investigated [3]. Moreover, differences in drug absorption, penetration and availability to the structures of the eye, severity of the infections, efficacy and safety of medication, and antibiotic susceptibility pattern could decide for choosing proper antibiotics to each type of ocular bacterial infection [4, 5]. However, treatment for most ocular bacterial infections is primarily empirical with broad-spectrum antibiotics which results in resistance to commonly used antibiotics [2]. Moreover, widespread misuse of broad-spectrum antibiotics such as bacterial, viral infections or prophylactics has resulted in emerging problems of antibiotic resistance [6, 7].

In Ethiopia, eye infections caused by bacteria are important public health problems. Empirical broad-spectrum antibiotics treatments based on clinical observations are routinely practiced. These could be responsible for emerging antibiotic resistance problems over time. We and others reported before [8,9,10] a high rate of drug resistant bacteria isolates, but without defining the types of ocular manifestations in Ethiopia. However, in studies so far reported in Ethiopia [8, 10,11,12,13], the bacterial pathogens and their antibiotic drug resistance profiles were done with no identifications of specific clinical manifestations. As a continuation of our strategy in documenting antibiotic resistance profiles over a period of time [8, 9], in this study, we identified common external ocular infections and determined bacteriological analysis and antimicrobial susceptibility testing.

Main text

Materials and methods

Sample collection and bacterial identification

A prospective cross-sectional study was conducted among patients who attended the Ophthalmology Department, University of Gondar, Ethiopia. Sociodemographic data collection and relevant clinical evaluations of 210 patients with external ocular infections were done using a structured standard questionnaire. External ocular infections were clinically defined after the patients were examined by an ophthalmologist. Then, eye discharge from each patient was collected using soft-tipped applicators of sterile cotton swabs with due care to avoid possible sources of contamination.

Bacterial identification from eye discharge specimens was performed using standard procedures [14]. Direct Gram staining was done for all specimens. The specimens were inoculated on a proper culture media; blood agar (Oxoid, Hampshire, UK), MacConkey agar (Oxoid, Hampshire, UK) and Chocolate agar (Oxoid, Hampshire, UK) and incubated for 24 h at 37 °C. Bacteria were further characterized and confirmed using colony morphology and by the pattern of their biochemical reactions using the standard biochemical tests procedures, namely, indole production, lactose fermentation, hydrolysis of urea, citrate utilization, lysine decarboxylation, motility test, oxidase test for gram negative bacteria and for gram positive bacteria, mannitol fermentation, and catalase and coagulase tests [14].

Susceptibility testing

Once a pure culture was obtained, a loopful of bacteria was taken from the colony and transferred to a tube containing 5 ml tryptone broth and mixed gently until a homogenous suspension was formed. The turbidity of the suspension was adjusted to the optical density of a McFarland 0.5 tube (0.14–0.15 nm) to standardize the inoculums size [15]. The inoculum of each isolate was swabbed onto a Mueller–Hinton (Oxoid, Hampshire, UK), chocolate and blood agars depending on the type of isolated bacteria.

Antimicrobial susceptibility testing was performed using agar disk diffusion technique according to Clinical Laboratory Standard Institute (CLSI) guidelines [16]. The sensitivity/resistance of isolated strains was tested with commonly used antibiotics. The following antibiotic disks were used; ampicillin (10 μg), chloramphenicol (30 μg), gentamicin (10 μg), vancomycin (30 μg), tetracycline (30 μg), co-trimoxazole (25 μg), amoxicillin (20 μg), ciprofloxacin (30 μg), ceftriaxone (30 μg), erythromycin (15 μg), penicillin (10 μg), and methicillin (5 μg) (Oxoid, Hampshire, UK). The antibiotics discs were added after drying the plates for 3–5 min. The plates were incubated aerobically at 37 °C for 24 h. Inhibition zone diameter was measured in millimeter using callipers and was interpreted as susceptible and resistant according to the standardized table supplied by the manufacturers. Reference strains of S. aureus (ATCC 25923) and E. coli (ATCC25922) were used as controls.

Data analysis

Data were entered and analyzed using SPSS version 16 statistical program. Descriptive statistics were used to explain sociodemographic, bacterial prevalence rate and antibiotic resistance/susceptibility patterns.


External ocular infections

Among 210 patients investigated, 60.0%(126) of them were above the age group of 45 years old and 52.3%(110) of them were men. Occupationally, 87.5%(183) of them were farmers and rural dwellers (Additional file 1). The commonest clinical presentation of external ocular infection observed were conjunctivitis; 32.9%(69) followed by blepharitis; 26.7%(56), dacryocystitis; 14.8%(51), blepharoconjunctivitis; 11.9%(25), trauma; 10.0%(21), and others various manifestations; 10.0%(21) (Additional file 1).

Bacterial isolates

Among the total of 210 patients, pathogenic bacteria were isolated in 62.4%(131) cases. The most prevalent isolates were coagulase negative Staphylococcus (CNS) 27.5%(36), S. aureus 26.7%(35), Pseudomonas species 10.7%(14), E. coli 7.6%(10), and Klebsiella species 6.1%(8) (Table 1). Among 131 bacteria; 32.8%(43), 23.7%(31), and 16.0%(21) of the isolates were detected in conjunctivitis, dacryocystitis, and blepharitis, respectively. The 27.5%(36) of bacteria were detected in other ocular infections (Table 1).

Table 1 Bacterial isolates in patients with external ocular infections, Gondar University Teaching Hospital, Ethiopia

Antimicrobial susceptibility testing

Overall, 35.9%(47), 32.1%(42), 25.2%(34), 25.2%(33) and 23.7%(31) of the bacterial isolates were resistant to tetracycline, amoxicillin, chloramphenicol, ampicillin, and nalidic acid, respectively. Among major gram positives; S. aureus showed 80.0%(28), 91.4%(32), and 94.3%(33) susceptible to ciprofloxacin, methicillin, and ceftriaxone, respectively. Thirty one (86.0%), 88.9%(32), and 91.7%(33) of CNS isolates were susceptible to erythromycin and ceftriaxone, co-trimoxazole, and methicillin, respectively (Table 2).

Table 2 Antibiotic resistance pattern of bacterial isolates in external ocular infections, Gondar University Teaching Hospital, Ethiopia

Among gram negatives; E. coli showed 50% resistance to amoxicillin and tetracycline and resistance pattern to the rest of antibiotics was equal to or less than 30% (Table 2). Around one-third (37.5%) of Klebsiella species were resistant to each of ampicillin, ciprofloxacin, gentamycin, and ceftriaxone. Over 78.6% of Pseudomonas species were susceptible to ampicillin, ciprofloxacin, gentamycin, and ceftriaxone. All isolates of H. influenzae was sensitive to ceftriaxone, and 90% were also susceptible to ampicillin, ciprofloxacin, gentamycin, and nalidic acid. Antibiotic susceptibility test patterns for the rest of bacterial isolates to each commonly prescribed antimicrobial agent tested are presented in Table 2.

Multi-drug resistance patterns (for two or more antibiotics tested) were common across tested isolates (Table 3). In particular, resistance to six antibiotics was observed in S. aureus and CNS. Among common gram negatives; Pseudomonas species, E. coli, Klebsiella species, Citrobacter species and P. vulgaris were resistant to four antibiotics (Table 3). Overall; 20.6%(27), 18.3%(24), and 17.6%(23) of bacterial isolates were resistant to two, three, and four antibiotics tested, respectively (Table 3).

Table 3 Multiple antibiotic resistance patterns of bacterial isolates in ocular infections, Gondar University Teaching Hospital, Ethiopia

Association of ocular infections, bacteria isolates and antibiotic resistance profiles

None of the sociodemographic variables showed significant association with the bacterial isolates and the prevalence of antibiotics resistance. Similarly, the bacterial isolates and the overall antibiotic resistance profiles showed no significant difference with many of the ocular infection types (Additional file 1).


The external ocular bacterial infections identified in this study were diverse in terms of the clinical features, the bacterial isolates, and the antibiotic resistance patterns. Conjunctivitis was the most common ocular infections followed by blepharitis, dacryocystitis, blepharoconjunctivitis, and trauma. The ocular infections types identified in the current study were similar to other parts of Ethiopia [11,12,13]. A study reported external ocular infections were one of the five top causes of eye morbidity in elderly patients, however, first being cataract, followed by trachoma, presbyopia, and glaucoma [17]. The disparity might be attributed that the latter study was exclusively on elderly patients, but the former studies included all categories of age with external ocular bacterial infections.

About 62.4% pathogenic bacteria were identified in all types of external ocular infections which was higher than our previous retrospective study report of 54.2% [8]. In particular, the bacteria distributions from conjunctivitis and blepharitis patients were significant. The prevalence rate found in the current study was within ranges of the prevalence (from 47 to 74.7%) of bacterial pathogens that were reported in different parts of Ethiopia [8, 10,11,12, 17]. The most prevalent isolates were CNS, S. aureus, Pseudomonas species, E. coli and Klebsiella species [8]. In our previous retrospective study, the commonest isolated bacteria were S. aureus, CNS, and Streptococcus species [8]. Similarly, in studies so far done in Ethiopia, either S. aureus or CNS were the predominant [8,9,10,11,12,13]. Actually, S. aureus was also one of the threats of eye infection and showed a significant increasing trends overtime [18, 19].

In recent times, evolving bacterial resistance represents a worldwide challenge in the management of clinical infections [2, 20] which is also very evident in Ethiopian day-to-day clinical practices [21]. In the current study, tetracycline, amoxicillin, ampicillin, chloramphenicol and nalidic acid were resistant to the bacterial isolates with prevalence rates of 35.9, 32.1, 25.2, 26.2 and 23.7%, respectively. In particular, the potency of ampicillin and tetracycline showed lower efficacy for almost all isolates. Among major gram-positives; S. aureus showed 80.0, 88.6, 91.4, and 94.3% susceptibility to ciprofloxacin, vancomycin, methicillin, and ceftriaxone, respectively. Ciprofloxacin susceptibility rate (80.0%) seen in this study was higher than the rate (51.0%) reported before [8, 22]. In line to the current findings, Arantes et al. [23] also reported CNS was the most frequent isolate which showed 70–90% susceptibility rate to vancomycin, chloramphenicol, gentamicin, cefotaxime, oxacillin, ciprofloxacin, and others. In the current study, three isolates each from S. aureus and CNS were found to be methicillin resistant. Hospital acquired methicillin resistant S. aureus (MRSA) has been involved with ocular infections in association to hospital acquired exposure [3] and thus need a special emphasis to avoid emergence and spread of MRSA.

Among gram-negatives; E. coli showed 50% resistance to amoxicillin and tetracycline, and resistance pattern to the rest of antibiotics were less than 31%. Around one-third of Klebsiella species were resistant to ampicillin, ciprofloxacin, gentamycin, and ceftriaxone. The resistance to Pseudomonas species to ampicillin, ciprofloxacin, gentamycin, and ceftriaxone seek great attention. Of course, a similar higher incidence resistance rate to commonly used antibiotics was found for most gram-negative bacteria, particularly Pseudomonas species [3]. Gram-negative bacteria, mainly Pseudomonas, were the most common multidrug-resistant bacteria [19]. Nevertheless, we found that all isolates of H. influenzae were susceptible to ceftriaxone and 90% of it also susceptible to ampicillin, ciprofloxacin, gentamycin and nalidic acid.

The emergence of multidrug resistant strains of bacteria is quite challenging [20] and becomes a matter of concern globally [2, 20, 21]. In the current study, most bacterial isolates showed resistance pattern to more than two antibiotics with the overall prevalence of 66.4%, but less than our retrospective study (77.3%) [8] and earlier report (87.1%) of the area [10]. Specific to the dominant bacterial species identified, for instance, we found a higher rate of multi-drug resistant isolates (to six antibiotics) for S. aureus and CNS. In addition, many of the isolates such as Pseudomonas species, E. coli, Klebsiella species, Citrobacter species and P. vulgaris were resistant to four antibiotics tested. Overall, 20.6%, 18.3%, and 17.6% of bacterial isolates were resistant to two, three, and four commonly prescribed antibiotics tested in this study.

In addition to the obvious selective pressures for an antimicrobial drug resistance mechanisms [7, 8], the frequent usage of the antibiotics by the patients before visiting the hospital could be responsible for the high percentage of resistance pattern in this study. For instance, 28.6% of the attendants had a history of previous antibiotics use without physician prescription before their hospital visit. However, but none of the sociodemographic variables showed significant association with the bacterial isolates and the overall prevalence of antibiotics resistance rate. Moreover, no certain types of eye infections were more prone to the overall prevalence of the antibiotic resistance rate.


The clinical information, bacteriological analysis and associated antimicrobial susceptibility rate observed in this study are useful for making an evidence-based selection of antibiotics therapy in the setting. We recommend a similar study over a period of time to follow antibiotic susceptibility patterns.


Facility and resource limitations hindered similar characterization of ocular external infections from anaerobic bacteria, fungal and viral pathogens.



coagulase negative Staphylococcus


methicillin resistant Staphylococcus aureus


  1. Gopinathan U, Sharma S, Garg P, Rao G. Review of epidemiological features, microbiological diagnosis and treatment outcome of microbial keratitis: experience of over a decade. Indian J Ophthalmol. 2009;57(4):273–9.

    Article  PubMed  PubMed Central  Google Scholar 

  2. Bertino JS. Impact of antibiotic resistance in the management of ocular infections: the role of current and future antibiotics. Clin Ophthalmol. 2009;3:507–21.

    Article  PubMed  PubMed Central  Google Scholar 

  3. Teweldemedhin M, Gebreyesus H, Atsbaha AH, Asgedom SW, Saravanan M. Bacterial profile of ocular infections: a systematic review. BMC Ophthalmol. 2017;17(1):212.

    Article  PubMed  PubMed Central  Google Scholar 

  4. Nigatu A. Pattern of microbial agents of external ocular infections in Federal Police hospital and Minilik II Memorial hospital, Addis Ababa, Ethiopia (thesis). Addis Ababa: Addis Ababa University; 2004.

    Google Scholar 

  5. Thielene S, Castle H, Terry J. Anterior ocular infections: an overview of pathophysiolgy and treatment. Ann Pharmacol. 2000;34:235–46.

    Article  Google Scholar 

  6. Gaynor BD, Chidambarm JD, Cevallos V, Miao Y, Jha HC, Bhatta RC, et al. Topical ocular antibiotics induce bacterial resistance at extraocular sites. Br J Ophthalmol. 2005;89:1097–9.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  7. Montagnani F, Malandrini A, Stolzuoli L, Lomurno L, Buccoliero D, Zanchi A. Microbiological features of acute bacterial conjunctivitis in a central Italian area. New Microbiol. 2008;31:291–4.

    PubMed  Google Scholar 

  8. Anagaw B, Biadglegne F, Belyhun Y, Anagaw B, Mulu A. Bacteriology of ocular infections and antibiotic susceptibility pattern in Gondar University Hospital, northwest Ethiopia. Ethiop Med J. 2011;49(2):117–23.

    PubMed  Google Scholar 

  9. Assefa Y, Moges F, Endris M, Zereay B, Amare B, Bekele D, Tesfaye S, Mulu A, Belyhun Y. Bacteriological profile and drug susceptibility patterns in dacryocystitis patients attending Gondar University Teaching Hospital, Northwest Ethiopia. BMC Ophthalmol. 2015;15:34.

    Article  PubMed  PubMed Central  Google Scholar 

  10. Muluye D, Wondimeneh Y, Moges F, Nega T, Ferede G. Types and drug susceptibility patterns of bacterial isolates from eye discharge sample at Gondar University Hospital, Northwest Ethiopia. BMC Res Notes. 2014;12(7):292.

    Article  Google Scholar 

  11. Getahun E, Gelaw B, Assefa A, Assefa Y, Amsalu A. Bacterial pathogens associated with external ocular infections alongside eminent proportion of multidrug resistant isolates at the University of Gondar Hospital, northwest Ethiopia. BMC Ophthalmol. 2017;17:151.

    Article  PubMed  PubMed Central  Google Scholar 

  12. Tesfaye T, Beyene G, Gelaw Y, Bekele S, Saravanan M. Bacterial profile and antimicrobial susceptibility pattern of external ocular infections in Jimma University specialized hospital, Southwest Ethiopia. Am J Inf Dis Microbiol. 2013;1(1):13–20.

    Google Scholar 

  13. Shiferaw B, Gelaw B, Assefa A, Assefa Y, Addis Z. Bacterial isolates andtheir antimicrobial susceptibility pattern among patients with externalocular infections at Borumeda hospital, Northeast Ethiopia. BMC Ophthalmol. 2015;14(15):103.

    Article  CAS  Google Scholar 

  14. Cheesbrough M. “Biochemical tests to identify bacteria”, in district laboratory practice in tropical countries, part 2. Cambridge: Cambridge University Press; 2000. p. 63–70.

    Google Scholar 

  15. Bauer AW, Kirby WM, Sherries JC. Antibiotic susceptibility testing by a standardized single disk method. Amer J Clin Pathol. 1996;45:493–6.

    Article  Google Scholar 

  16. Clinical and Laboratory Standards Institute (CLSI). Performance standards for antibiotics susceptibility testing, twenty-first informational supplement. Wayne: CLSI; 2011. p. 31.

    Google Scholar 

  17. Assegid A. Avoidable visual impairment among elderly people in a slum of Addis Ababa. Ethiop J Health Dev. 2001;15:139–44.

    Google Scholar 

  18. Vola E, Moriyama S, Lisboa R, Vola M, Hirai E, Bispo M, Hofling-Lima L. Prevalence and antibiotic susceptibility of methicillin-resistant Staphylococcus Aureus in ocular infections. Arq Bras Oftalmol. 2013;76(6):350–3.

    Article  PubMed  Google Scholar 

  19. Pathengay A, Moreker MR, Puthusser YR, Ambatipudi S, Jalali S, Majji AB, et al. Clinical and microbiologic review of culture-proven endophthalmitis caused by multidrug-resistant bacteria in patients seen at a tertiary eye care center in southern India. Retina. 2011;31:1806–11.

    Article  PubMed  Google Scholar 

  20. Sharma S. Antibiotic resistance in ocular bacterial pathogens. Indian J Med Microbiol. 2011;29(3):218–22.

    Article  PubMed  CAS  Google Scholar 

  21. Moges F, Endris M, Mulu A, Tessema B, Belyhun Y, Shiferaw Y, Huruy K, Unakal C, Kassu A. The growing challenges of antibacterial drug resistance in Ethiopia. J Glob Antimicrob Resist. 2014;2(3):148–54.

    Article  PubMed  Google Scholar 

  22. Schimel AM, Miller D, Flynn HW. Isolates and antibiotic susceptibilities: a 10-year review of culture-proven cases. Am J Ophthalmol. 2013;156:50–2.

    Article  PubMed  CAS  Google Scholar 

  23. Arantes TEF, Cavalcanti RF, Alves Diniz MdF, Severo MS, Neto JL, Machado Barbosa de Castro CM. Conjunctival bacterial flora and antibiotic resistance pattern in patients undergoing cataract surgery. Arq Bras Oftalmol. 2006;69(1):33–6.

    Article  PubMed  Google Scholar 

Download references

Authors’ contributions

YB: conceived, designed, data management, analysis, and interpretation of the findings and drafting the manuscript. YB, FM, ME, BA, BA, DB, ST, MA, AM, FB, and YA: analysis, interpretation, and reviewing the manuscript. All authors read and approved the final manuscript.


We would like to gratefully acknowledge the study participants without whom this work would have not been a reality. We also acknowledge the staff nurses working in the Ophthalmology Department and staffs to the services Diagnostic Laboratory of the University of Gondar hospital for their support during data collection and sample processing.

Competing interests

The authors declare that they have no competing interests.

Availability of data and materials

Data generated or analyzed during this study are included in this article and/or available as the additional files in this publication.

Consent for publication

Not applicable.

Ethics approval and consent to participation

Ethical approval was granted from the Institutional Ethical Review Board of University of Gondar and permission was obtained from the University of Gondar Teaching Hospital. Verbal consent from each study participant was obtained before data collection. Parental/guardian consent was granted for each child study participants whose age was below 15 years old.


The study was granted from Research and Community Services Office, University of Gondar, Ethiopia.

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Author information

Authors and Affiliations


Corresponding author

Correspondence to Yeshambel Belyhun.

Additional file

Additional file 1.

Comparison of the distribution of the sociodemographic and external ocular infections with total bacteria isolates and associated antibiotic resistance profiles.

Rights and permissions

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (, which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( applies to the data made available in this article, unless otherwise stated.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Belyhun, Y., Moges, F., Endris, M. et al. Ocular bacterial infections and antibiotic resistance patterns in patients attending Gondar Teaching Hospital, Northwest Ethiopia. BMC Res Notes 11, 597 (2018).

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: