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Deriving objectively-measured sedentary indices from free-living accelerometry data in rural and urban African settings: a cost effective approach
BMC Research Notes volume 12, Article number: 573 (2019)
To investigate the agreement between two data reduction approaches for detecting sedentary breaks from uni-axial accelerometry data collected in human participants. Free-living, uni-axial accelerometer data (n = 318) were examined for sedentary breaks using two different methods (Healy–Matthews; MAH/UFFE). The data were cleaned and reduced using MAH/UFFE Analyzer software and custom Microsoft Excel macro’s, such that the average daily sedentary break number were calculated for each data record, for both methods.
The Healy–Matthews and MAH/UFFE average daily break number correlated closely (R2 = 99.9%) and there was high agreement (mean difference: + 0.7 breaks/day; 95% limits of agreement: − 0.06 to + 1.4 breaks/day). A slight bias of approximately + 1 break/day for the MAH/UFFE Analyzer was evident for both the regression and agreement analyses. At a group level there were no statistically or practically significant differences within sample groups between the two methods.
The seminal study of Healy et al. demonstrated the usefulness of objectively-measured indices of sedentary behaviour, namely sedentary time and specifically sedentary breaks (periods of physical activity punctuating sedentary time) . Subsequent to the Healy et al. study, further evidence has emerged supporting the use of objectively-measured sedentary time and sedentary breaks [2,3,4]. More recently, in addition to sedentary time and breaks, the importance of sedentary bout durations has been highlighted . The accumulating evidence regarding the importance of sedentary behaviour [6, 7] has led to a proliferation of terminology, definitions, measurement techniques and methods [3, 8,9,10].
To date, the extraction of these objectively-measured sedentary-related variables, has utilized software which requires some level of programming skills (R, SAS, MatLab) [1,2,3, 5, 9]. More recently, commercial proprietary software such as Actilife  and MeterPlus™  provide researchers with the ability to extract these variables without the need for programming skills. However, this software is costly such that an additional barrier exists for researchers from low resource settings to implement these variables in their analyses. Initial software costs range from approximately USD 695 to USD 1695 for a single-user licence, and an additional USD 200 annual renewal per licence.
Freeware software such as MAH/UFFE has been used extensively to clean and score accelerometry data whether describing physical activity (non-sedentary time) (≥ 100 counts) or sedentary time (< 100 counts). As of May 2019, approximately 329 items were retrieved from Google Scholar (excluding citations and patents) using the search term ‘MAHUFFE’, and 79 items were retrieved from PubMed Central (4 papers reported the use of MAHUFFE for 2017–2019).
However, it must be stated that a sedentary break is in essence the initiation of a bout of physical activity. Since a cut-point or threshold is employed (≥ 100 counts) , it is thus possible to specify parameters within the MAH/UFFE configuration such that sedentary breaks can be easily determined. Importantly, as far as the author is aware, no study has used MAH/UFFE to extract sedentary breaks. Consequently, this analysis evaluates the agreement in indentifying sedentary breaks using the accepted Healy–Matthews algorithm  and the MAH/UFFE accelerometer data reduction software, using accelerometer data collected in rural and urban African participants during a physical activity questionnaire validation study [12, 13] and a free-living, cross-sectional survey . Previous analyses of this data did not include sedentary breaks as a sedentary index. Because the initial analysis of this data utilized MAH/UFFE, further analyses of this data will require the use of the same software to maintain consistency. Hence, there is a need to determine the validity of using MAH/UFFE to extract sedentary breaks against an accepted standard.
Dikgale Health and Demographic Surveillance System site (DHDSS) sample 
Rural, adult females resident in the DHDSS , were conveniently recruited (n = 262). The participants generally performed subsistence tasks (housework, fetching wood and water, walking as a means of transport).
Male and female adults, resident on farms and villages, were conveniently recruited from a local lumber mill situated in the Limpopo Province, South Africa (n = 30). These participants performed a variety of manual tasks (plantations created and maintained, raw timber harvested, sized, cleaned and stacked).
A convenience sample was recruited from male and female adult staff and students of the University of the Limpopo (Turfloop Campus), and adult residents (office workers, teachers) from the surrounding community (Mankweng) and nearby city (Polokwane) (n = 26). The participants performed tasks typical of office workers (sitting, standing quietly and bouts of exercise; gymnasium, walking/jogging, sport).
Data collection and initial data reduction
The initial data reduction methodology is described in detail elsewhere . In short, participants were asked to wear uni-axial accelerometers for six to seven complete days. The CSA model 7164 (Rural and Urban sample) and MTI model AM-7164-2.2 (DHDSS sample) are both products of Actigraph, LLC, Pensacola, FL, USA (formerly Computer Science Applications, Inc. Shalimar, FL and MTI Health Services, Fort Walton Beach, FL). The minute-by-minute data were downloaded from the accelerometers onto an IBM-compatible personal computer via an interface unit, for further analysis using specialized software (MAH/UFFE Analyzer version 22.214.171.124; http://www.mrc-epid.cam.ac.uk/physical-activity-downloads/). Unlike an earlier analysis , the MAH/UFFE configuration file was modified such that sedentary breaks of ≥ 1 min could be detected and summarized (see Additional file 1). In this case, the MAH/UFFE settings detect ≥ 1 min bouts of ≥ 100 acceleration counts. In other words, the number of sedentary breaks and total break time are determined. The resulting summary Microsoft Excel file was imported into a statistical package for further analysis. From the total number of sedentary breaks and total break time, a daily average was calculated for each participant by dividing the totals by the number of valid days.
Additional data reduction and sedentary break analysis
For this analysis individual, minute-by-minute data files (CSV, long format; Fig. 1a) created with MAH/UFFE were batch-converted to individual Microsoft Excel files using a custom Microsoft Visual Basic macro. Thereafter, the data for non-valid days (indentified in the initial data reduction) and non-wear time (identified in the initial data reduction) were removed for each individual, minute-by-minute Microsoft Excel file using a customized Microsoft Visual Basic macro. Finally, the number of total sedentary breaks and total break time for the Healy–Matthews algorithm  and a Microsoft Excel Array function were calculated for each cleaned, individual minute-by-minute Microsoft Excel file using a customized Microsoft Visual Basic macro. The resulting summary Microsoft Excel file was imported into a statistical package for further analysis. From the total number of sedentary breaks and total break time, a daily average was calculated for each participant by dividing the totals by the number of valid days. The Microsoft Visual Basic macros used in this analysis can be obtained from the author by request.
The SAS syntax for the Healy–Matthews algorithm  was obtained from the authors (Dr Genevieve N Healy, personal communication) and implemented within a Microsoft Excel spreadsheet (Fig. 1a, b). Unlike the Healy–Matthews algorithm, the MAH/UFFE software does not require the deletion of excluded values (non-wear time, counts = 0 for 60 consecutive minutes) when detecting bouts, but rather codes the excluded values as “TRUE” (Fig. 1a, Column D). Counts ≤ 99 were defined as sedentary and coded as “1” (Fig. 1a, Column E). The Healy–Matthews algorithm requires the use of a “lag” function to identify a sedentary break (Fig. 1a, Column F). The total break time (counts ≥ 100) was calculated by counting the number of zeros (Fig. 1a, Column E).
In addition, a Microsoft Excel Array function (Fig. 1c) was used to detect the number of sedentary breaks or the number of one-or-more consecutive zero’s (Fig. 1a, Column E). The total break time (counts ≥ 100) was calculated using a Microsoft Excel Array function (Fig. 1a, Column E).
Figure 1d is a diagrammatic representation of the first 26 min of a participant’s data in Fig. 1a, and also illustrates a potential sedentary break (activity) bracketed by two non-wear time periods. In this example there are 11 min of sedentary behaviour (counts ≤ 99) distributed as 5 continuous sedentary bouts, and 5 corresponding sedentary breaks, within the first 26 min.
Descriptive statistics comprised means and one standard deviation (SD). One-way Analysis of Variance was used to compare variables across groups (samples and algorithms). Post hoc multiple comparison analyses (Sidak’s t-test) assessed group differences. Linear regression was used to examine the relationship between output variables from the Healy–Matthews and MAH/UFFE algorithms. Bland–Altman plots explored the agreement between the outputs of the Healy–Matthews and MAH/UFFE algorithms. Data were analysed using appropriate statistical software (Stata/SE for Windows: Release 15.1. College Station, TX: StataCorp LP, 2018). Significance was set at p < 0.05.
Considering the sedentary breaks per day and the minutes per break, across the three samples, and the Healy–Matthews and MAH/UFFE algorithms, there was no statistical or practical difference between the algorithms (Table 1).
Moreover, there were no significant differences across the algorithms for the combined data (n = 318) for both average breaks per day or average total break time (p ≥ 0.911); the values were virtually identical across algorithms (average total break time: 429 ± 90 min day−1, average break number: 72 ± 14 to 73 ± 14 breaks day−1).
Both the agreement analysis (Fig. 2a) and linear regression (Fig. 2b), demonstrated a slight bias toward detecting approximately 1 sedentary break per day more with the MAH/UFFE software. Only 2.2% of the data points fell outside the 95% limits of agreement; the maximum difference was < 2.5 sedentary breaks per day (Fig. 2a).
This analysis is novel in that, as far as the author is aware, this is the first time that it has been demonstrated that the MAH/UFFE data reduction software is capable of identifying sedentary breaks in high agreement with the accepted Healy–Matthews algorithm. In addition, since MAH/UFFE uses Microsoft Excel in its underlying architecture, it is not surprising that the Microsoft Excel Array functions agreed well with the MAH/UFFE output.
Second, this analysis provides novel sedentary data. As far as the author is aware, this is the first sedentary break data from a rural African setting. The number of breaks per day reported from more urbanized settings [2,3,4,5] tends to be higher than the values reported for the two rural groups in this study, but similar to the urban sample. Further analysis is required around the descriptive epidemiology of these indices in rural African rural samples, and the independent relationship of these sedentary indices to health variables.
The likely explanation for the slight bias is the manner in which non-wear periods are dealt with by the two algorithms. The Healy–Matthews algorithm  requires the physical removal of non-wear time, such that any sedentary break bracketed by non-wear time will most likely be added to an activity period on either side of the non-wear-time. However, it is possible that such a bracketed sedentary break could also remain as such, if the valid wear times, adjacent to the non-wear times, are valid sedentary bouts. On the other hand, the MAH/UFFE algorithm does not physically remove the non-wear time, and thus allows a sedentary break, bracketed as such, to be counted as a valid sedentary break i.e. a period of activity. In essence, the MAH/UFFE algorithm characterizes the non-wear times as sedentary. However, the agreement analysis suggests that although this does occur often (93% of differences > 0), 98% of the differences are ≤ 1.4 sedentary breaks per day. It seems unlikely that these algorithmic artefacts are of any practical significance, especially at the group level. This analysis does also demonstrate that the Healy–Matthews algorithm  can be employed on MAH/UFFE processed data files using Excel and custom macro’s, such that more direct comparisons can be made to published data [2,3,4,5], although, as stated earlier, it is unlikely that the differences will be practically significant when using the MAH/UFFE algorithm.
While this analysis has shown the utility of using an existing data reduction programme to identify important sedentary behaviour indices, MAH/UFFE is not capable of detecting bouts of sedentary time (≤ 99 counts) as suggested by Kim et al. . A solution is to use Microsoft Excel Array functions to detect sedentary bouts.
It is also important to note that the MAH/UFFE data reduction software is only capable of reducing Actigraph uni-axial data files, not bi- or tri-axial Actigraph data files. However, a file converter is available which can convert bi- or tri-axial files to uni-axial or vector magnitude data files, which in turn can be reduced with the MAH/UFFE software.
This paper has shown that a ubiquitous measure in sedentary behaviour research, namely sedentary breaks, can be extracted with high agreement to an accepted standard, with minimal effort and cost.
Due to the cross-sectional, convenience sampling in this study, the results cannot be readily generalized to the respective rural and urban populations from whence the participants were recruited.
Availability of data and materials
The data analysed during the current study are not publicly available due to the original consent and ethics approval not containing approval from the participants for data sharing. Reasonable requests would be considered in consultation with the University of Limpopo Ethics Committee and the various community leaders.
Dikgale Health and Demographic Surveillance System Site
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The author would like to thank the communities, participants and field workers of the Dikgale Demographic and Health Surveillance System Site.
The Research Development and Administration Division of the University of Limpopo (Turfloop Campus) and the Thuthuka and Institutional Research Development Programmes of the National Research Foundation of South Africa supported the initial studies on which this manuscript is based [12, 14].
Ethics approval and consent to participate
Ethics approval for the initial data collection [12, 14] was obtained from the University of Limpopo Research Ethics Committee. The ethical letters were dated November 13, 1998 (no reference number) and December 14, 2005 (SREC 2004/538-562). The participants recruited into the original studies were informed about the study objectives, expected outcomes, benefits and the risks associated with it. Written informed consent was obtained from the participants prior to interviews and measurements.
Consent for publication
The author declares no competing interests.
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Cook, I. Deriving objectively-measured sedentary indices from free-living accelerometry data in rural and urban African settings: a cost effective approach. BMC Res Notes 12, 573 (2019) doi:10.1186/s13104-019-4606-4
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