Forero DA, Lopez-Leon S, Perry G. A brief guide to the science and art of writing manuscripts in biomedicine. J Transl Med. 2020;18(1):425.
Article
PubMed
PubMed Central
Google Scholar
Piwowar H, Priem J, Lariviere V, Alperin JP, Matthias L, Norlander B, Farley A, West J, Haustein S. The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles. PeerJ. 2018;6:e4375.
Article
PubMed
PubMed Central
Google Scholar
Colavizza G, Hrynaszkiewicz I, Staden I, Whitaker K, McGillivray B. The citation advantage of linking publications to research data. PLoS ONE. 2020;15(4):e0230416.
Article
CAS
PubMed
PubMed Central
Google Scholar
Onie S. Redesign open science for Asia, Africa and Latin America. Nature. 2020;587(7832):35–7.
Article
CAS
PubMed
Google Scholar
Hicks DJ. Open science, the replication crisis, and environmental public health. Account Res. 2021. https://doi.org/10.1080/08989621.2021.1962713.
Article
PubMed
Google Scholar
Allen C, Mehler DMA. Open science challenges, benefits and tips in early career and beyond. PLoS Biol. 2019;17(5):e3000246.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nosek BA, Alter G, Banks GC, Borsboom D, Bowman SD, Breckler SJ, Buck S, Chambers CD, Chin G, Christensen G, et al. Scientific Standards. Promoting an open research culture. Science. 2015;348(6242):1422–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Munafo MR, Nosek BA, Bishop DVM, Button KS, Chambers CD, du Sert NP, Simonsohn U, Wagenmakers EJ, Ware JJ, Ioannidis JPA. A manifesto for reproducible science. Nat Hum Behav. 2017;1:0021.
Article
PubMed
PubMed Central
Google Scholar
Ioannidis JP, Greenland S, Hlatky MA, Khoury MJ, Macleod MR, Moher D, Schulz KF, Tibshirani R. Increasing value and reducing waste in research design, conduct, and analysis. Lancet. 2014;383(9912):166–75.
Article
PubMed
PubMed Central
Google Scholar
Pampel H, Vierkant P, Scholze F, Bertelmann R, Kindling M, Klump J, Goebelbecker HJ, Gundlach J, Schirmbacher P, Dierolf U. Making research data repositories visible: the re3data.org Registry. PLoS One. 2013;8(11):e78080.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang H, Chen Y, Lin Y, Abesig J, Wu IX, Tam W. The methodological quality of individual participant data meta-analysis on intervention effects: systematic review. BMJ. 2021;373:736.
Article
Google Scholar
Forero DA, Lopez-Leon S, Gonzalez-Giraldo Y, Bagos PG. Ten simple rules for carrying out and writing meta-analyses. PLoS Comput Biol. 2019;15(5):e1006922.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rung J, Brazma A. Reuse of public genome-wide gene expression data. Nat Rev Genet. 2013;14(2):89–99.
Article
CAS
PubMed
Google Scholar
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001;29(4):365–71.
Article
CAS
PubMed
Google Scholar
Danchev V, Min Y, Borghi J, Baiocchi M, Ioannidis JPA. Evaluation of data sharing after implementation of the International Committee of Medical Journal Editors Data Sharing Statement Requirement. JAMA Netw Open. 2021;4(1):e2033972.
Article
PubMed
PubMed Central
Google Scholar
Alsheikh-Ali AA, Qureshi W, Al-Mallah MH, Ioannidis JP. Public availability of published research data in high-impact journals. PLoS ONE. 2011;6(9):e24357.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wicherts JM, Bakker M, Molenaar D. Willingness to share research data is related to the strength of the evidence and the quality of reporting of statistical results. PLoS ONE. 2011;6(11):e26828.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, et al. Repeatability of published microarray gene expression analyses. Nat Genet. 2009;41(2):149–55.
Article
CAS
PubMed
Google Scholar
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data. 2016;3:160018.
Article
PubMed
PubMed Central
Google Scholar
Michener WK. Ten simple rules for creating a good data management plan. PLoS Comput Biol. 2015;11(10):e1004525.
Article
PubMed
PubMed Central
CAS
Google Scholar
Corpas M, Kovalevskaya NV, McMurray A, Nielsen FGG. A FAIR guide for data providers to maximise sharing of human genomic data. PLoS Comput Biol. 2018;14(3):e1005873.
Article
PubMed
PubMed Central
CAS
Google Scholar
Broman KW. Woo KHJTAS: data organization in spreadsheets. Am Stat. 2018;72(1):2–10.
Article
Google Scholar
Ziemann M, Eren Y, El-Osta A. Gene name errors are widespread in the scientific literature. Genome Biol. 2016;17(1):177.
Article
PubMed
PubMed Central
Google Scholar
Carroll MW. Creative commons and the openness of open access. N Engl J Med. 2013;368(9):789–91.
Article
CAS
PubMed
Google Scholar
Wilson SL, Way GP, Bittremieux W, Armache JP, Haendel MA, Hoffman MM. Sharing biological data: why, when, and how. FEBS Lett. 2021;595(7):847–63.
Article
CAS
PubMed
Google Scholar
Meyer MN. Practical tips for ethical data sharing. Adv Methods Pract Psychol Sci. 2018;1(1):131–44.
Article
Google Scholar
Mello MM, Lieou V, Goodman SN. Clinical trial participants’ views of the risks and benefits of data sharing. N Engl J Med. 2018;378(23):2202–11.
Article
PubMed
PubMed Central
Google Scholar
Shahin MH, Bhattacharya S, Silva D, Kim S, Burton J, Podichetty J, Romero K, Conrado DJ. Open data revolution in clinical research: opportunities and challenges. Clin Transl Sci. 2020;13(4):665–74.
Article
PubMed
PubMed Central
Google Scholar
Cummings JA, Zagrodney JM, Day TE. Impact of open data policies on consent to participate in human subjects research: discrepancies between participant action and reported concerns. PLoS ONE. 2015;10(5):e0125208.
Article
PubMed
PubMed Central
CAS
Google Scholar
Taichman DB, Sahni P, Pinborg A, Peiperl L, Laine C, James A, Hong ST, Haileamlak A, Gollogly L, Godlee F, et al. Data sharing statements for clinical trials: a requirement of the International Committee of Medical Journal Editors. PLoS Med. 2017;14(6):e1002315.
Article
PubMed
PubMed Central
Google Scholar
Jack CR Jr, Bernstein MA, Fox NC, Thompson P, Alexander G, Harvey D, Borowski B, Britson PJ, Whitwell J, Ward C, et al. The Alzheimer’s Disease Neuroimaging Initiative (ADNI): MRI methods. J Magn Reson Imaging. 2008;27(4):685–91.
Article
PubMed
PubMed Central
Google Scholar
Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, et al. The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository. J Digit Imaging. 2013;26(6):1045–57.
Article
PubMed
PubMed Central
Google Scholar
Sayers EW, Beck J, Bolton EE, Bourexis D, Brister JR, Canese K, Comeau DC, Funk K, Kim S, Klimke W, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2021;49(D1):D10–7.
Article
CAS
PubMed
Google Scholar
Cook CE, Stroe O, Cochrane G, Birney E, Apweiler R. The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. Nucleic Acids Res. 2020;48(D1):D17–23.
Article
CAS
PubMed
Google Scholar
ww PDBc: Protein Data Bank: the single global archive for 3D macromolecular structure data. Nucleic Acids Res 2019;47(D1):D520–D528.
Article
CAS
Google Scholar
Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, et al. The image data resource: a bioimage data integration and publication platform. Nat Methods. 2017;14(8):775–81.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ohno-Machado L, Sansone SA, Alter G, Fore I, Grethe J, Xu H, Gonzalez-Beltran A, Rocca-Serra P, Gururaj AE, Bell E, et al. Finding useful data across multiple biomedical data repositories using DataMed. Nat Genet. 2017;49(6):816–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nikiforova A, McBride KJT. Informatics: open government data portal usability: a user-centred usability analysis of 41 open government data portals. Telematics Inform. 2021;58:101539.
Article
Google Scholar
Treloar AJ. The research data alliance: globally co-ordinated action against barriers to data publishing and sharing. Learn Publ. 2014;27(5):S9–13.
Article
Google Scholar
Fenner M, Crosas M, Grethe JS, Kennedy D, Hermjakob H, Rocca-Serra P, Durand G, Berjon R, Karcher S, Martone M, et al. A data citation roadmap for scholarly data repositories. Sci Data. 2019;6(1):28.
Article
PubMed
PubMed Central
Google Scholar
Perrier L, Blondal E, MacDonald H. The views, perspectives, and experiences of academic researchers with data sharing and reuse: a meta-synthesis. PLoS ONE. 2020;15(2):e0229182.
Article
CAS
PubMed
PubMed Central
Google Scholar
Demetres MR, Delgado D, Wright DN. The impact of institutional repositories: a systematic review. J Med Libr Assoc. 2020;108(2):177–84.
Article
PubMed
PubMed Central
Google Scholar
Figueiredo AS. Data sharing: convert challenges into opportunities. Front Public Health. 2017;5:327.
Article
PubMed
PubMed Central
Google Scholar
Giardine B, Borg J, Higgs DR, Peterson KR, Philipsen S, Maglott D, Singleton BK, Anstee DJ, Basak AN, Clark B, et al. Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach. Nat Genet. 2011;43(4):295–301.
Article
CAS
PubMed
Google Scholar
Patrinos GP, Cooper DN, van Mulligen E, Gkantouna V, Tzimas G, Tatum Z, Schultes E, Roos M, Mons B. Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain. Hum Mutat. 2012;33(11):1503–12.
Article
PubMed
Google Scholar
Georgitsi M, Viennas E, Gkantouna V, Christodoulopoulou E, Zagoriti Z, Tafrali C, Ntellos F, Giannakopoulou O, Boulakou A, Vlahopoulou P, et al. Population-specific documentation of pharmacogenomic markers and their allelic frequencies in FINDbase. Pharmacogenomics. 2011;12(1):49–58.
Article
CAS
PubMed
Google Scholar
Sosnay PR, Siklosi KR, Van Goor F, Kaniecki K, Yu H, Sharma N, Ramalho AS, Amaral MD, Dorfman R, Zielenski J, et al. Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene. Nat Genet. 2013;45(10):1160–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nikiforova A. Smarter Open Government Data for Society 5.0: are your open data smart enough? Sensors. 2021;21(15):5204.
Article
PubMed
PubMed Central
Google Scholar
Callaghan S. Data sharing in a time of pandemic. Patterns. 2020;1(5):100086.
Article
PubMed
PubMed Central
Google Scholar
Curioso WH, Carrasco-Escobar G. Collaboration in times of COVID-19: the urgent need for open-data sharing in Latin America. BMJ Health Care Inform. 2020;27(1):e100159.
Article
PubMed
Google Scholar
Xu B, Gutierrez B, Mekaru S, Sewalk K, Goodwin L, Loskill A, Cohn EL, Hswen Y, Hill SC, Cobo MM, et al. Epidemiological data from the COVID-19 outbreak, real-time case information. Sci Data. 2020;7(1):106.
Article
CAS
PubMed
PubMed Central
Google Scholar
Adetula A, Forscher PS, Basnight-Brown D, Azouaghe S, Ouherrou N, Charyate A, Hansen N, Adetula GA. IJzerman H. Synergy between the credibility revolution and human development in Africa. 2021. https://doi.org/10.31730/osf.io/e57bq.