Paterson AH, Bowers JE, Chapman BA: Ancient polyploidization predating divergence of cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA. 2004, 101: 9903-9908. 10.1073/pnas.0307901101.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gale MD, Devos KM: Plant comparative genetics after 10 years. Science. 1998, 282: 656-659. 10.1126/science.282.5389.656.
Article
CAS
PubMed
Google Scholar
Feuillet C, Keller B: Comparative genomics in the grass family: Molecular characterization of grass genome structure and evolution. Annl Bot. 2002, 89: 3-10. 10.1093/aob/mcf008.
Article
CAS
Google Scholar
Xu Y, McCouch SR, Zhang Q: How can we use genomics to improve cereals with rice as a reference genome?. Plant Mol Biol. 2005, 59: 7-26. 10.1007/s11103-004-4681-2.
Article
CAS
PubMed
Google Scholar
Gaut BS: Evolutionary dynamics of grass genomes. New Phytol. 2002, 154: 15-28. 10.1046/j.1469-8137.2002.00352.x.
Article
CAS
Google Scholar
Garvin DF: Brachypodium: a new monocot model plant system emerges. J Sci Food Agric. 2007, 87: 1177-1179. 10.1002/jsfa.2868.
Article
CAS
Google Scholar
Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, Luo MC, Gu YQ: The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics. 2008, 8: 135-147. 10.1007/s10142-007-0062-7.
Article
CAS
PubMed
Google Scholar
Salse J, Bolot S, Throude M, Jouffe V, Piegu B, Quraishi UM, Calcagno T, Cooke R, Delseny M, Feuillet C: Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Plant Cell. 2008, 20: 11-24. 10.1105/tpc.107.056309.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bortiri E, Coleman-Derr D, Lazo GR, Anderson OD, Gu YQ: The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Res Notes. 2008, 1: 61-10.1186/1756-0500-1-61.
Article
PubMed Central
PubMed
Google Scholar
Gill BS, Friebe B, Endo TR: Standard karyotype and nomenclature system for description of chromosome bands and structural aberrations in wheat (Triticum aestivum). Genome. 1991, 34: 830-839.
Article
Google Scholar
Rice Pseudomolecules Information. [http://rice.plantbiology.msu.edu/pseudomolecules/info.shtml]
Bolot S, Abrouk M, Masood-Quraishi U, Stein N, Messing J, Feuillet C, Salse J: The 'inner circle' of the cereal genome. Curr Opin Plant Biol. 2008, 12: 1-7.
Article
Google Scholar
Sorrells ME, La Rota M, Bermudez-Kandianis CE, Greene RA, Kantety R, Munkvold JD, Miftahudin , Mahmoud A, Ma X, Gustafson PJ, Qi LL, Echalier B, Gill BS, Matthews DE, Lazo GR, Chao S, Anderson OD, Edwards H, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorak J, Zhang D, Nguyen HT, Peng J, Lapitan NLV, Gonzalez-Hernandez JL, Anderson JA, Hossain K, Kalavacharla V, Kianian SF, Choi D-W, Close TJ, Dilbirligi M, Gill KS, Steber C, Walker-Simmons MK, McGuire PE, Qualset CO: Comparative DNA sequence analysis of wheat and rice genomes. Genome Res. 2003, 13: 1818-1827.
PubMed Central
CAS
PubMed
Google Scholar
Huo N, Gu YQ, Lazo GR, Vogel JP, Coleman-Derr D, Luo M-C, Thilmony R, Garvin DF, Anderson OD: Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 2006, 49: 1099-1108. 10.1139/G06-087.
Article
CAS
PubMed
Google Scholar
Faris JD, Zhang Z, Fellers JP, Gill BS: Micro-colinearity between rice, Brachypodium and T. monococcum at the wheat domestication locus Q. Funct Integr Genomics. 2008, 8: 149-164. 10.1007/s10142-008-0073-z.
Article
CAS
PubMed
Google Scholar
Bossolini E, Wicker T, Knobel PA, Keller B: Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J. 2007, 49: 704-717. 10.1111/j.1365-313X.2006.02991.x.
Article
CAS
PubMed
Google Scholar
Akhunov ED, Goodyear AW, Geng S, Qi LL, Echalier B, Gill BS, Miftahudin , Gustafson JP, Lazo G, Chao S, Anderson OD, Linkiewicz AM, Dubcovsky J, La Rota M, Sorrells ME, Zhang D, Nguyen HT, Kalavacharla V, Hossain K, Kianian SF, Peng J, Lapitan NLV, Gonzalez-Hernandez JL, Anderson JA, Choi D-W, Close TJ, Dilbirligi M, Gill KS, Walker-Simmons MK, Steber C, McGuire PE, Qualset CQ, Dvorak J: The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res. 2003, 13: 753-763. 10.1101/gr.808603.
Article
PubMed Central
CAS
PubMed
Google Scholar
See DR, Brooks S, Nelson JC, Brown-Guedira G, Friebe B, Gill BS: Gene evolution at the ends of wheat chromosomes. Proc Natl Acad Sci USA. 2006, 103: 4162-4167. 10.1073/pnas.0508942102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Genomics and Gene Discovery bEST Resource. [http://brachypodium.pw.usda.gov/]
Brachypodium BLAST Server. [http://blast.brachybase.org/]
GrainGenes 2.0 Basic local Alignment Search Tool. [http://wheat.pw.usda.gov/GG2/blast.shtml]
Gramene Multi Basic local Alignment Search Tool. [http://www.gramene.org/Multi/blastview]
Bin Mapped wEST Sequences Information. [http://wheat.pw.usda.gov/cgi-bin/westsql/maplocus.cgi]
Oryza sativa japonica KaryoView. [http://www.gramene.org/Oryza_sativa_japonica/karyoview]
NCBI Basic Local Alignment Search Tool. [http://blast.ncbi.nlm.nih.gov/Blast.cgi]
Simple Sequence Repeat Identification Tool. [http://www.gramene.org/db/searches/ssrtool]
Program to Pick Primers from a DNA Sequence. [http://fokker.wi.mit.edu/cgi-bin/primer3/primer3.cgi]
Tegelstrom H: Detection of mitochondrial DNA fragments. The Molecular Genetic Analysis of Populations: A Practical Approach. Edited by: Hoelzel AR. 1992, Oxford, IRL Press, 89-114.
Google Scholar