D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Silva CD, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, et al: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature. 2012, 488: 213-219. 10.1038/nature11241.
Article
PubMed
Google Scholar
Davey MW, Gudimella R, Harikrishna JA, Sin LW, Khalid N, Keulemans J: A draft Musa balbisiana genome sequence for molecular genetics in polyploidy, inter- and intra-specific Musa hybrids. BMC Genomics. 2013, 14: 683-10.1186/1471-2164-14-683.
Article
PubMed
CAS
PubMed Central
Google Scholar
McGinnis MK: RNAi for Functional Genomics in Plants. Briefings in Functional Genomics. 2010, Oxford: Oxford University Press, 111-117. 9
Google Scholar
Prelich G: Gene overexpression: uses, mechanisms, and interpretation. Genetics. 2012, 190: 841-854. 10.1534/genetics.111.136911.
Article
PubMed
CAS
PubMed Central
Google Scholar
Remy S, Buyens A, Cammue BPA, Swennen R, Sági L: Production of transgenic banana plants expressing antifungal proteins. Acta Hort. 1998, 490: 433-436.
Article
CAS
Google Scholar
Remy S, François I, Cammue BPA, Swennen R, Sági L: Co-transformation as a potential tool to create multiple and durable resistance in banana (Musa spp.). Acta Hort. 1998, 461: 361-365.
Article
Google Scholar
Kovács G, Sági L, Jacon G, Arinaitwe G, Busogoro J-P, Thiry E, Strosse H, Swennen R, Remy S: Expression of a rice chitinase gene in transgenic banana (‘Gros Michel’, AAA genome group) confers resistance to black leaf streak disease. Transgenic Res. 2012, 22: 117-130.
Article
PubMed
PubMed Central
Google Scholar
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, et al: Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science. 2003, 301 (5633): 653-657. 10.1126/science.1086391.
Article
PubMed
Google Scholar
Athma P, Grotewold E, Peterson T: Insertional mutagenesis of the maize P gene by intragenic transposition of Ac. Genetics. 1992, 131: 199-209.
PubMed
CAS
PubMed Central
Google Scholar
Greco R, Ouwerkerk BF, Sallaud C, Kohli A, Colombo L, Puigdomènech P, Guiderdoni E, Christou P, Hoge JHC, Pereira A: Transposon insertional mutagenesis in rice. Plant Physiol. 2001, 125: 1175-1177. 10.1104/pp.125.3.1175.
Article
PubMed
CAS
PubMed Central
Google Scholar
Tadege M, Wen J, He J, Tu H, Kwak Y, Eschstruth A, Cayrel A, Endre G, Zhao PX, Chabaud M, Ratet P, Mysore KS: Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula. Plant J. 2008, 54 (2): 335-347. 10.1111/j.1365-313X.2008.03418.x.
Article
PubMed
CAS
Google Scholar
Meissner R, Chague V, Zhu Q, Emmanuel E, Elkind Y, Levy AA: A high throughput system for transposon tagging and promoter trapping in tomato. Plant J. 2000, 22 (3): 265-274. 10.1046/j.1365-313x.2000.00735.x.
Article
PubMed
CAS
Google Scholar
Remy S, Thiry E, Coesmans B, Windelinckx S, Swennen R, Sági L: Improved T-DNA vector for tagging plant promoters via high-throughput luciferase screening. BioTechniques. 2005, 38: 763-770. 10.2144/05385RR01.
Article
PubMed
CAS
Google Scholar
Santos E, Remy S, Thiry E, Windelinckx S, Swennen R, Sági L: Characterization and isolation of a T-DNA tagged banana promoter active during in vitro culture and low temperature stress. BMC Plant Biol. 2009, 9: 77-10.1186/1471-2229-9-77.
Article
PubMed
PubMed Central
Google Scholar
Tuschl T: RNA interference and small interfering RNAs. Chem Biochem. 2001, 2: 239-245.
CAS
Google Scholar
Hammond SM, Caudy AA, Hannon GJ: Post-transcriptional gene silencing by double-stranded RNA. Nature Rev Genet. 2001, 2: 110-119. 10.1038/35052556.
Article
PubMed
CAS
Google Scholar
Lawrence RJ, Pikaard CS: Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations. Plant J. 2003, 36: 114-121. 10.1046/j.1365-313X.2003.01857.x.
Article
PubMed
CAS
Google Scholar
Miki D, Itoh R, Shimamoto K: RNA silencing of single and multiple members in a gene family of rice. Plant Physiol. 2005, 138: 1903-1913. 10.1104/pp.105.063933.
Article
PubMed
CAS
PubMed Central
Google Scholar
Travella S, Klimm TE, Keller B: RNA interference-based gene silencing as an efficient tool for functional genomics in hexaploid bread wheat. Plant Physiol. 2006, 142: 6-20. 10.1104/pp.106.084517.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kim DH, Rossi JJ: RNAi mechanisms and applications. Biotechniques. 2008, 44 (5): 613-616.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hoffer P, Ivashuta S, Pontes O, Vitins A, Pikaard C, Mroczka A, Wagner N, Voelker T: Posttranscriptional gene silencing in nuclei. Proc Natl Acad Sci U S A. 2011, 108 (1): 409-414. 10.1073/pnas.1009805108.
Article
PubMed
CAS
PubMed Central
Google Scholar
Parent J-S, de Alba AEM, Vaucheret H: The origin and effect of small RNA signaling in plants. Front Plant Sci. 2012, 3: 179-
Article
PubMed
PubMed Central
Google Scholar
Hamilton A, Voinnet O, Chappell L, Baulcome D: Two classes of short interfering RNA in RNA silencing. The EMBO J. 2002, 21: 4671-4679. 10.1093/emboj/cdf464.
Article
PubMed
CAS
Google Scholar
Tang G, Reinhart BJ, Bartel DP, Zamore PD: A biochemical framework for RNA silencing in plants. Genes Dev. 2003, 17: 49-63. 10.1101/gad.1048103.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gasciolli V, Mallory AC, Bartel DP, Vaucheret H: Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol. 2005, 15: 1494-1500. 10.1016/j.cub.2005.07.024.
Article
PubMed
CAS
Google Scholar
Brosnan CA, Voinnet O: Cell-to-cell and long-distance siRNA movement in plants: mechanisms and biological implications. Curr Opin Plant Biol. 2011, 14: 580-587. 10.1016/j.pbi.2011.07.011.
Article
PubMed
CAS
Google Scholar
Vaucheret H: Plant ARGONAUTES. Trends Plant Sci. 2008, 13 (7): 350-358. 10.1016/j.tplants.2008.04.007.
Article
PubMed
CAS
Google Scholar
Mei C, Zhou X, Yang Y: Use of RNA interference to dissect defense-signaling pathways in rice. Methods Mol Biol. 2007, 354: 161-171.
PubMed
CAS
Google Scholar
McGinnis K: Assessing the efficiency of RNA interference for maize functional genomics. Plant Physiol. 2007, 143: 1441-1451. 10.1104/pp.106.094334.
Article
PubMed
CAS
PubMed Central
Google Scholar
Ge H, Chen C, Jing W, Zhang Q, Wang H, Wang R, Zhang W: The rice diacylglycerol kinase family: functional analysis using transient RNA interference. Front Plant Sci. 2012, 3: 60-
Article
PubMed
CAS
PubMed Central
Google Scholar
Andrieu A, Breitler JC, Siré C, Meynard D, Gantet P, Guiderdoni E: An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa L.) leaves. Rice. 2012, 5: 23-10.1186/1939-8433-5-23.
Article
PubMed
Google Scholar
Ingelbrecht IL, Irvine JE, Mirkov TE: Posttranscriptional gene silencing in transgenic sugarcane. Dissection of homology-dependent virus resistance in a monocot that has a complex polyploid genome. Plant Physiol. 1999, 119 (4): 1187-1198. 10.1104/pp.119.4.1187.
Article
PubMed
CAS
PubMed Central
Google Scholar
Regina A, Kosar-Hashemi B, Ling S, Li Z, Rahman S, Morell M: Control of starch branching in barley defined through differential RNAi suppression of starch branching enzyme IIa and IIb. J Exp Bot. 2010, 61 (5): 1469-1482. 10.1093/jxb/erq011.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wang T, Iyer LM, Pancholy R, Shir X, Hall TC: Assessment of penetration and expressivity of RNAi-mediated silencing of the Arabidopsis phytoene desaturase gene. New Phytol. 2005, 167 (3): 751-760. 10.1111/j.1469-8137.2005.01454.x.
Article
PubMed
CAS
Google Scholar
Dare AP, Tomes S, Jones M, McGhie TK, Stevenson DE, Johnson RA, Greenwood DR, Hellens RP: Phenotypic changes associated with RNA interference silencing of chalcone synthase in apple (Malus x domestica). Plant J. 2013, 74: 398-410. 10.1111/tpj.12140.
Article
PubMed
CAS
Google Scholar
Lu S, Shi R, Tsao CC, Yi X, Li L, Chiang VL: RNA silencing in plants by the expression of siRNA duplexes. Nucleic Acids Res. 2004, 32 (21): e171-10.1093/nar/gnh170.
Article
PubMed
PubMed Central
Google Scholar
Waterhouse PM, Graham MW, Wang MB: Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc Natl Acad Sci U S A. 1998, 95: 13959-13964. 10.1073/pnas.95.23.13959.
Article
PubMed
CAS
PubMed Central
Google Scholar
Coemans B, Matsumura H, Terauchi R, Remy S, Swennen R, Sági L: SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism. Theor Appl Genet. 2005, 111: 1118-1126. 10.1007/s00122-005-0039-7.
Article
PubMed
CAS
Google Scholar
Pérez Hernández JB, Remy S, Swennen R, Sági L: Banana (Musa sp.). Agrobacterium Protocols. Edited by: Wang K. 2006, New York City: Humana Press Inc, 167-175. 2
Chapter
Google Scholar
Strosse H, Schoofs H, Panis B, Andre E, Reyniers K, Swennen R: Development of embryogenic cell suspensions from shoot meristematic tissue in bananas and plantains (Musa spp.). Plant Sci. 2006, 170 (1): 104-112. 10.1016/j.plantsci.2005.08.007.
Article
CAS
Google Scholar
Hamilton AJ, Baulcombe DC: A species of small antisense RNA in posttranscriptional gene silencing in plants. Science. 1999, 286: 950-952. 10.1126/science.286.5441.950.
Article
PubMed
CAS
Google Scholar
Zamore PD, Tuschl T, Sharp PA, Bartel DP: RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell. 2000, 101: 25-33. 10.1016/S0092-8674(00)80620-0.
Article
PubMed
CAS
Google Scholar
Elbashir SM, Lendeckel W, Tuschl T: RNA interference is mediated by 21-and 22- nucleotide RNAs. Genes Dev. 2001, 15: 188-200. 10.1101/gad.862301.
Article
PubMed
CAS
PubMed Central
Google Scholar
Vaucheret H, Béclin C, Fagard M: Post-transcriptional gene silencing in plants. J Cell Sci. 2001, 114: 3083-3091.
PubMed
CAS
Google Scholar
Johansen LK, Carrington JC: Silencing on the spot. Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system. Plant Physiol. 2001, 126: 930-938. 10.1104/pp.126.3.930.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wesley SV, Helliwell CA, Smith NA, Wang MB, Rouse DT, Liu Q, Gooding PS, Singh SP, Abbott D, Stoutjesdijk PA, Robinson SP, Gleave AP, Green AG, Waterhouse PM: Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J. 2001, 27 (6): 581-590. 10.1046/j.1365-313X.2001.01105.x.
Article
PubMed
CAS
Google Scholar
Thomas CL, Jones L, Baulcombe DC, Maule AJ: Size constraints for targeting post-transcriptional gene silencing and for RNA-directed methylation in Nicotiana benthamiana using a potato virus X vector. Plant J. 2001, 25 (4): 417-425. 10.1046/j.1365-313x.2001.00976.x.
Article
PubMed
CAS
Google Scholar
Hoffmann T, Kalinowski G, Schwab W: RNAi-induced silencing of gene expression in strawberry fruit (Fragaria x ananassa) by agroinfiltration: a rapid assay for gene function analysis. The Plant J. 2006, 48: 818-826. 10.1111/j.1365-313X.2006.02913.x.
Article
PubMed
CAS
Google Scholar
Bhaskar PB, Venkateshwaran M, Wu L, Ané J-M, Jiang J: Agrobacterium-mediated transient gene expression and silencing: a rapid tool for functional gene assay in potato. PLoS ONE. 2009, 4 (6): e5812-10.1371/journal.pone.0005812.
Article
PubMed
PubMed Central
Google Scholar
Smith NA, Singh SP, Wang MB, Stoutjesdijk PA, Green AG, Waterhouse PM: Total silencing by intron-spliced hairpin RNAs. Nature. 2000, 407: 319-320. 10.1038/35030305.
Article
PubMed
CAS
Google Scholar
Yan P, Shen W, Gao X, Li X, Zhou P, Duan J: High-throughput construction of intron-containing hairpin RNA vectors for RNAi in plants. PLoS ONE. 2012, 7 (5): e38186-10.1371/journal.pone.0038186.
Article
PubMed
CAS
PubMed Central
Google Scholar
Bertazzon N, Raiola A, Castiglioni C, Gardiman M, Angelini E, Borgo M, Ferrari S: Transient silencing of the grapevine gene VvPgIP1 by agroinfiltration with a construct for RNA interference. Plant Cell Rep. 2012, 31: 133-143. 10.1007/s00299-011-1147-2.
Article
PubMed
CAS
Google Scholar
Guleria P, Yadav SK: Agrobacterium mediated transient silencing (AMTS) in Stevia rebaudiana: insights into steviol glycoside biosynthesis pathway. PLoS ONE. 2013, 8 (9): e74731-10.1371/journal.pone.0074731.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zhang Y, Wang Y, Wang C: Gene overexpression and gene silencing in birch using an Agrobacterium-mediated transient expression system. Mol Biol Rep. 2012, 39: 5537-5541. 10.1007/s11033-011-1357-2.
Article
PubMed
CAS
Google Scholar
Shekhawat UKS, Ganapathi TR, Srinivas L, Bapat VA, Rathore TS: Agrobacterium-mediated genetic transformation of embryogenic cell suspension cultures of Santalum album L. Plant Cell Tiss Organ Cult. 2008, 92: 261-271. 10.1007/s11240-007-9330-4.
Article
CAS
Google Scholar
Bezanilla M, Perroud PF, Pan A, Klueh P, Quatrano RS: An RNAi system in Physcomitrella patens with an internal marker for silencing allows for rapid identifications of loss of function phenotypes. Plant Biol. 2005, 7: 251-257. 10.1055/s-2005-837597.
Article
PubMed
CAS
Google Scholar
Vaucheret H, Béclin C, Elmayan T, Feuerbach F, Godon C, Morel J-B, Mourrain P, Palauqui J-C, Vernhettes S: Transgene-induced gene silencing in plants. The Plant J. 1998, 16: 651-659. 10.1046/j.1365-313x.1998.00337.x.
Article
PubMed
CAS
Google Scholar
Paul J, Becker DK, Dickman MB, Harding RM, Khanna HK, Dale JL: Apoptosis-related genes confer resistance to fusarium wilt in transgenic ‘lady finger’ bananas. Plant Biotech J. 2011, 9: 1141-1148. 10.1111/j.1467-7652.2011.00639.x.
Article
CAS
Google Scholar
Shekhawat UKS, Ganapathi TR, Hadapad AB: Transgenic banana plants expressing small interfering RNAs targeted against viral replication initiation gene display high-level resistance to banana bunchy top virus infection. J Gen Virol. 2012, 93: 1804-1813. 10.1099/vir.0.041871-0.
Article
PubMed
CAS
Google Scholar
Kumar GBS, Srinivas L, Ganapathi TR: Iron fortification of banana by the expression of soybean ferritin. Biol Trace Elem Res. 2011, 142: 232-241. 10.1007/s12011-010-8754-6.
Article
PubMed
CAS
Google Scholar
Dhed’a D, Dumortier F, Panis B, Vuysteke D, De Langhe E: Plant regeneration in cell suspension cultures of the cooking banana cv. Bluggoe (Musa spp. ABB group). Fruits. 1991, 46: 125-135.
Google Scholar
De Bondt A, Eggermont K, Druart P, Vil MD, Goderis I, Vanderleyden J, Broekaert WF: Agrobacterium-mediated transformation of apple (Malus x domestica Borkh.): an assessment of factors affecting gene transfer efficiency during early transformation steps. Plant Cell Rep. 1994, 13: 587-593. 10.1007/BF00234517.
Article
PubMed
CAS
Google Scholar
Hood EE, Chilton WS, Chilton MD, Fraley RT: T-DNA and opine synthetic loci tumors incited by Agrobacterium tumefaciens A281 on soybean and alfalfa plants. J Bacteriol. 1986, 168 (3): 1283-1290.
PubMed
CAS
PubMed Central
Google Scholar
Greenup AG, Sasani S, Oliver SN, Talbot MJ, Dennis ES, Hemming MN, Trevaskis B: ODDSOC2 is a MADS box floral repressor that is down-regulated by vernalization in temperate cereals. Plant Physiol. 2010, 153: 1062-1073. 10.1104/pp.109.152488.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hood EE, Gelvin SB, Melchers LS, Hoekema A: New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res. 1993, 2 (4): 208-218. 10.1007/BF01977351.
Article
CAS
Google Scholar
Aljanabi SM, Martinez I: Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 1997, 25 (22): 4692-4693. 10.1093/nar/25.22.4692.
Article
PubMed
CAS
PubMed Central
Google Scholar
Podevin N, Krauss A, Henry I, Swennen R, Remy S: Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa. Mol Breed. 2012, 30: 1237-1252. 10.1007/s11032-012-9711-1.
Article
PubMed
CAS
PubMed Central
Google Scholar
Bradford MM: A rapid sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye biding. Anal Biochem. 1976, 72: 248-254. 10.1016/0003-2697(76)90527-3.
Article
PubMed
CAS
Google Scholar
Jefferson RA: Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep. 1987, 5 (4): 387-405. 10.1007/BF02667740.
Article
CAS
Google Scholar