Barrett J: Anhydrobiotic nematodes. Agric Zool Rev. 1982, 4: 161-176.
Google Scholar
Kranner I, Beckett RP, Wornik S, Zorn M, Pfeifhofer HW: Revival of a resurrection plant correlates with its antioxidant status. Plant J. 2002, 31: 13-24.
PubMed
CAS
Google Scholar
Keilin D: The Leeuwenhoek lecture--the problem of anabiosis or latent life--history and current concepts. Proc R Soc Lond B Biol Sci. 1959, 150: 149-191.
PubMed
CAS
Google Scholar
Aroian RV, Carta L, Kaloshian I, Sternberg PW: A free-living Panagrolaimus sp. from Armenia can survive in anhydrobiosis for 8.7 years. J Nematol. 1993, 25: 500-502.
PubMed
CAS
PubMed Central
Google Scholar
de Castro AG, Lapinski J, Tunnacliffe A: Anhydrobiotic engineering. Nat Biotechnol. 2000, 18: 473-473.
PubMed
CAS
Google Scholar
Leprince O, Buitink J: Desiccation tolerance: from genomics to the field. Plant Sci. 2010, 179: 554-564.
CAS
Google Scholar
Clegg JS: Origin of trehalose and its significance during formation of encysted dormant embryos of Artemia salina. Comp Biochem Physiol. 1965, 14: 135-143.
PubMed
CAS
Google Scholar
Watanabe M, Kikawada T, Okuda T: Increase of internal ion concentration triggers trehalose synthesis associated with cryptobiosis in larvae of Polypedilum vanderplanki. J Exp Biol. 2003, 206: 2281-2286.
PubMed
CAS
Google Scholar
Womersley C: A reevaluation of strategies employed by nematode anhydrobiotes in relation to their natural environment. Vistas on Nematology. Edited by: Veech DA, Dickson DW. 1987, Hyattsville, MD: Society of Nematologists Inc., 165-173.
Google Scholar
Oliver MJ, Velten J, Wood AJ: Bryophytes as experimental models for the study of environmental stress tolerance: Tortula ruralis and desiccation-tolerance in mosses. Plant Ecol. 2000, 151: 73-84.
Google Scholar
Oliver MJ, Hudgeons J, Dowd SE, Payton PR: A combined subtractive suppression hybridization and expression profiling strategy to identify novel desiccation response transcripts from Tortula ruralis gametophytes. Physiol Plant. 2009, 136: 437-460.
PubMed
CAS
Google Scholar
Womersley CZ, Wharton DA, Higa LM: Survival biology. The physiology and Biochemistry of Free-Living and Plant-Parasitic Nematodes. Edited by: Perry RN, Wright DJ. 1998, Wallingford, Oxon., UK: CABI Publishing, 271-302.
Google Scholar
Perry RN, Moens M: Survival of parasitic nematodes outside the host. Molecular and Physiolgical Basis of Nematode Survival. Edited by: Perry RN, Wharton DA. 2011, Wallingford, UK: CAB International, 1-27.
Google Scholar
Wharton DA, Petrone L, Duncan A, McQuillan AJ: A surface lipid may control the permeability slump associated with entry into anhydrobiosis in the plant parasitic nematode Ditylenchus dipsaci. J Exp Biol. 2008, 211: 2901-2908.
PubMed
CAS
Google Scholar
Shannon AJ, Browne JA, Boyd J, Fitzpatrick DA, Burnell AM: The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae). J Exp Biol. 2005, 208: 2433-2445.
PubMed
CAS
Google Scholar
Perry RN: Desiccation survival of parasitic nematodes. Parasitology. 1999, 119: S19-S30.
PubMed
Google Scholar
Bert W, Leliaert F, Vierstraete AR, Vanfleteren JR, Borgonie G: Molecular phylogeny of the Tylenchina and evolution of the female gonoduct (Nematoda: Rhabditida). Mol Phylogenet Evol. 2008, 48: 728-744.
PubMed
CAS
Google Scholar
Wharton DA, Barclay S: Anhydrobiosis in the free-living Antarctic nematode Panagrolaimus davidi (Nematoda, Rhabditida). Fundam Appl Nematol. 1993, 16: 17-22.
Google Scholar
Ricci C, Pagani M: Desiccation of Panagrolaimus rigidus (Nematoda): survival, reproduction and the influence on the internal clock. Hydrobiologia. 1997, 347: 1-13.
Google Scholar
Shannon AJ, Tyson T, Dix I, Boyd J, Burnell AM: Systemic RNAi mediated gene silencing in the anhydrobiotic nematode Pangrolaimus superbus. BMC Mol Biol. 2008, 9: 58-
PubMed
PubMed Central
Google Scholar
Wharton DA, Ferns DJ: Survival of intracellular freezing by the Antarctic nematode Panagrolaimus davidi. J Exp Biol. 1995, 198: 1381-1387.
PubMed
Google Scholar
Boström S: Descriptions and morphological variability of three populations of Panagrolaimus Fuchs, 1930 (Nematoda, Panagrolaimidae). Nematologica. 1988, 34: 144-155.
Google Scholar
Nomination of Surtsey for the UNESCO World Heritage List. Edited by: Baldursson S, Ingadóttir Á. 2007, Reykjavík: Icelandic Institute of Natural History
Google Scholar
[http://www.nematodes.org/nematodegenomes/index.php?title=About#tab=Welcome]
Blaxter ML, De Ley P, Garey JR, Liu LX, Scheldeman P, Vierstraete A, Vanfleteren JR, Mackey LY, Dorris M, Frisse LM, et al: A molecular evolutionary framework for the phylum Nematoda. Nature. 1998, 392: 71-75.
PubMed
CAS
Google Scholar
Erkut C, Penkov S, Khesbak H, Vorkel D, Verbavatz J-M, Fahmy K, Kurzchalia TV: Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation. Curr Biol. 2011, 21: 1331-1336.
PubMed
CAS
Google Scholar
Parkinson J, Anthony A, Wasmuth J, Schmid R, Hedley A, Blaxter M: PartiGene--constructing partial genomes. Bioinformatics. 2004, 20: 1398-1404.
PubMed
CAS
Google Scholar
Klasson L, Walker T, Sebaihia M, Sanders MJ, Quail MA, Lord A, Sanders S, Earl J, O'Neill SL, Thomson N, et al: Genome evolution of Wolbachia strain wPip from the Culex pipien s group. Mol Biol Evol. 2008, 25: 1877-1887.
PubMed
CAS
PubMed Central
Google Scholar
McLeod A, Smart CD, Fry WE: Characterization of 1,3-beta-glucanase and 1,3;1,4-beta-glucanase genes from Phytophthora infestans. Fungal Genet Biol. 2003, 38: 250-263.
PubMed
CAS
Google Scholar
Kikuchi T, Shibuya H, Jones JT: Molecular and biochemical characterization of an endo-beta-1,3-glucanase from the pinewood nematode Bursaphelenchus xylophilus acquired by horizontal gene transfer from bacteria. Biochem J. 2005, 389: 117-125.
PubMed
CAS
PubMed Central
Google Scholar
Karim N, Jones JT, Okada H, Kikuchi T: Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae. BMC Genomics. 2009, 10: 525-
PubMed
PubMed Central
Google Scholar
Kyndt T, Haegeman A, Gheysen G: Evolution of GHF5 endoglucanase gene structure in plant-parasitic nematodes: no evidence for an early domain shuffling event. BMC Evol Biol. 2008, 8: 305-
PubMed
PubMed Central
Google Scholar
Jones JT, Furlanetto C, Kikuchi T: Horizontal gene transfer from bacteria and fungi as a driving force in the evolution of plant parasitism in nematodes. Nematology. 2005, 7: 641-646.
CAS
Google Scholar
Mayer WE, Schuster LN, Bartelmes G, Dieterich C, Sommer RJ: Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. BMC Evol Biol. 2011, 11: 13-
PubMed
CAS
PubMed Central
Google Scholar
Wasmuth J, Schmid R, Hedley A, Blaxter M: On the extent and origins of genic novelty in the Phylum Nematoda. PLoS Negl Trop Dis. 2008, 2 (7): e258-
PubMed
PubMed Central
Google Scholar
Yin Y, Martin J, Abubucker S, Wang ZY, Wyrwicz L, Rychlewski L, McCarter JP, Wilson RK, Mitreva M: Molecular determinants archetypical to the phylum Nematoda. BMC Genomics. 2009, 10: 114-
PubMed
PubMed Central
Google Scholar
Elsworth B, Wasmuth J, Blaxter M: NEMBASE4: the nematode transcriptome resource. Int J Parasitol. 2011, 41: 881-894.
PubMed
CAS
Google Scholar
Gallin MY, Tan M, Kron MA, Rechnitzer D, Greene BM, Newland HS, White AT, Taylor HR, Unnasch TR: Onchocerca volvulus recombinant antigen--physical characterization and clinical correlates with serum reactivity. J Infect Dis. 1989, 160: 521-529.
PubMed
CAS
Google Scholar
Rao KVN, Eswaran M, Ravi V, Gnanasekhar B, Narayanan RB, Kaliraj P, Jayaraman K, Marson A, Raghavan N, Scott AL: The Wuchereria bancrofti orthologue of Brugia malayi SXP1 and the diagnosis of bancroftian filariasis. Mol Biochem Parasitol. 2000, 107: 71-80.
PubMed
CAS
Google Scholar
Wang SH, Zheng HJ, Dissanayake S, Cheng WF, Tao ZH, Lin SZ, Piessens WF: Evaluation of recombinant chitinase and SXP1 antigens as antimicrofilarial vaccines. Am J Trop Med Hyg. 1997, 56: 474-481.
PubMed
CAS
Google Scholar
Tsuji N, Suzuki K, Kasuga-Aoki H, Isobe T, Arakawa T, Matsumoto Y: Mice intranasally immunized with a recombinant 16-kilodalton antigen from roundworm Ascaris parasites are protected against larval migration of Ascaris suum. Infect Immun. 2003, 71: 5314-5323.
PubMed
CAS
PubMed Central
Google Scholar
Fujiwara RT, Zhan B, Mendez S, Loukas A, Bueno LL, Wang Y, Plieskatt J, Oksov Y, Lustigman S, Bottazzi ME, et al: Reduction of worm fecundity and canine host blood loss mediates protection against hookworm infection elicited by vaccination with recombinant Ac-16. Clin Vaccine Immunol. 2007, 14: 281-287.
PubMed
CAS
PubMed Central
Google Scholar
Jones JT, Smant G, Blok VC: SXP/RAL-2 proteins of the potato cyst nematode Globodera rostochiensis: secreted proteins of the hypodermis and amphids. Nematology. 2000, 2: 887-893.
CAS
Google Scholar
Tytgat T, Vercauteren I, Vanholme B, De Meutter J, Vanhoutte I, Gheysen G, Borgonie G, Coomans A, Gheysen G: An SXP/RAL-2 protein produced by the subventral pharyngeal glands in the plant parasitic root-knot nematode Meloidogyne incognita. Parasitol Res. 2005, 95: 50-54.
PubMed
Google Scholar
Pujol N, Zugasti O, Wong D, Couillault C, Kurz CL, Schulenburg H, Ewbank JJ: Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptides. PLoS Pathog. 2008, 4 (7): e1000105-
PubMed
PubMed Central
Google Scholar
Wasmuth JD, Blaxter ML: Prot4EST: translating expressed sequence tags from neglected genomes. BMC Bioinformatics. 2004, 5: 187-
PubMed
PubMed Central
Google Scholar
Ward S, Burke DJ, Sulston JE, Coulson AR, Albertson DG, Ammons D, Klass M, Hogan E: Genomic organization of major sperm protein genes and pseudogenes in the nematode Caenorhabditis elegans. J Mol Biol. 1988, 199: 1-13.
PubMed
CAS
Google Scholar
Tarr DEK, Scott AL: MSP domain proteins. Trends Parasitol. 2005, 21: 224-231.
PubMed
CAS
Google Scholar
Blumenthal T, Squire M, Kirtland S, Cane J, Donegan M, Spieth J, Sharrock W: Cloning of a yolk protein gene family from Caenorhabditis elegans. J Mol Biol. 1984, 174: 1-18.
PubMed
CAS
Google Scholar
Spieth J, Blumenthal T: The Caenorhabditis elegans vitellogenin gene family includes a gene encoding a distantly related protein. Mol Cell Biol. 1985, 5: 2495-2501.
PubMed
CAS
PubMed Central
Google Scholar
Kimble J, Sharrock WJ: Tissue-specific synthesis of yolk proteins in Caenorhabditis elegans. Dev Biol. 1983, 96: 189-196.
PubMed
CAS
Google Scholar
Jorcano JL, Ruizcarrillo A: H3.H4 tetramer directs DNA and core histone octamer assembly in the nucleosome core particle. Biochemistry. 1979, 18: 768-774.
PubMed
CAS
Google Scholar
Storch J, Xu Z: Niemann-Pick C2 (NPC2) and intracellular cholesterol trafficking. Biochim Biophys Acta Mol Cell Biol Lipids. 2009, 1791: 671-678.
CAS
Google Scholar
Vanier MT, Millat G: Structure and function of the NPC2 protein. Biochim Biophys Acta Mol Cell Biol Lipids. 2004, 1685: 14-21.
CAS
Google Scholar
Harcus YM, Parkinson J, Fernandez C, Daub J, Selkirk ME, Blaxter ML, Maizels RM: Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites. Genome Biol. 2004, 5: R39-
PubMed
PubMed Central
Google Scholar
Schmid R, Blaxter ML: annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinforma. 2008, 9: 180-
Google Scholar
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y: KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008, 36: D480-D484.
PubMed
CAS
PubMed Central
Google Scholar
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al: Gene ontology: tool for the unification of biology. Nat Genet. 2000, 25: 25-29.
PubMed
CAS
PubMed Central
Google Scholar
Martinez A, Portero-Otin M, Pamplona R, Ferrer I: Protein targets of oxidative damage in human neurodegenerative diseases with abnormal protein aggregates. Brain Pathol. 2010, 20: 281-297.
PubMed
CAS
Google Scholar
Irvine GB, El-Agnaf OM, Shankar GM, Walsh DM: Protein aggregation in the brain: the molecular basis for Alzheimer's and Parkinson's diseases. Mol Med. 2008, 14: 451-464.
PubMed
CAS
PubMed Central
Google Scholar
Hegde AN, Upadhya SC: The ubiquitin-proteasome pathway in health and disease of the nervous system. Trends Neurosci. 2007, 30: 587-595.
PubMed
CAS
Google Scholar
Bonifati V, Rizzu P, Squitieri F, Krieger E, Vanacore N, van Swieten JC, Brice A, van Duijn CM, Oostra B, Meco G, Heutink P: DJ-1 (PARK7), a novel gene for autosomal recessive, early onset parkinsonism. Neurol Sci. 2003, 24: 159-160.
PubMed
CAS
Google Scholar
Shendelman S, Jonason A, Martinat C, Leete T, Abeliovich A: DJ-1 is a redox-dependent molecular chaperone that inhibits alpha-synuclein aggregate formation. PLoS Biol. 2004, 2: 1764-1773.
CAS
Google Scholar
Reardon W, Chakrabortee S, Pereira TC, Tyson T, Banton MC, Dolan KM, Culleton BA, Wise MJ, Burnell AM, Tunnacliffe A: Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae. BMC Mol Biol. 2010, 11: 6-
PubMed
PubMed Central
Google Scholar
Browne J, Tunnacliffe A, Burnell A: Anhydrobiosis--plant desiccation gene found in a nematode. Nature. 2002, 416: 38-38.
PubMed
CAS
Google Scholar
Chakrabortee S, Boschetti C, Walton LJ, Sarkar S, Rubinsztein DC, Tunnacliffe A: Hydrophilic protein associated with desiccation tolerance exhibits broad protein stabilization function. Proc Natl Acad Sci USA. 2007, 104: 18073-18078.
PubMed
CAS
PubMed Central
Google Scholar
de Nadal E, Alepuz PM, Posas F: Dealing with osmostress through MAP kinase activation. EMBO Rep. 2002, 3: 735-740.
PubMed
CAS
PubMed Central
Google Scholar
Cuenda A, Rousseau S: p38 MAP-Kinases pathway regulation, function and role in human diseases. Biochim Biophys Acta, Mol Cell Res. 2007, 1773: 1358-1375.
PubMed
CAS
Google Scholar
Jonak C, Kiegerl S, Ligterink W, Barker PJ, Huskisson NS, Hirt H: Stress signaling in plants: a mitogen-activated protein kinase pathway is activated by cold and drought. Proc Natl Acad Sci USA. 1996, 93: 11274-11279.
PubMed
CAS
PubMed Central
Google Scholar
Whitmarsh AJ: A central role for p38 MAPK in the early transcriptional response to stress. BMC Biol. 2010, 8: 47-
PubMed
PubMed Central
Google Scholar
Brewster JL, Devaloir T, Dwyer ND, Winter E, Gustin MC: An osmosensing signal transduction pathway in yeast. Science. 1993, 259: 1760-1763.
PubMed
CAS
Google Scholar
Ferrigno P, Posas F, Koepp D, Saito H, Silver PA: Regulated nucleo/cytoplasmic exchange of HOG1 MAPK requires the importin beta homologs NMD5 and XPO1. EMBO J. 1998, 17: 5606-5614.
PubMed
CAS
PubMed Central
Google Scholar
de Nadal E, Posas F: Multilayered control of gene expression by stress-activated protein kinases. EMBO J. 2010, 29: 4-13.
PubMed
CAS
PubMed Central
Google Scholar
Stokoe D, Engel K, Campbell DG, Cohen P, Gaestel M: Identification of MAPKAP kinase-2 as a major enzyme responsible for the phosphorylation of the small mammalian heat-shock proteins. FEBS Lett. 1992, 313: 307-313.
PubMed
CAS
Google Scholar
Ito H, Okamoto K, Nakayama H, Isobe T, Kato K: Phosphorylation of alpha B-crystallin in response to various types of stress. J Biol Chem. 1997, 272: 29934-29941.
PubMed
CAS
Google Scholar
Dalle-Donne I, Rossi R, Milzani A, Di Simplicio P, Colombo R: The actin cytoskeleton response to oxidants: From small heat shock protein phosphorylation to changes in the redox state of actin itself. Free Radic Biol Med. 2001, 31: 1624-1632.
PubMed
CAS
Google Scholar
Strange K, Denton J, Nehrke K: Ste20-Type kinases: evolutionarily conserved regulators of ion transport and cell volume. Physiology. 2006, 21: 61-68.
PubMed
CAS
Google Scholar
Choe KP, Strange K: Evolutionarily conserved WNK and Ste20 kinases are essential for acute volume recovery and survival after hypertonic shrinkage in Caenorhabditis elegans. Am J Physiol Cell Physiol. 2007, 293: C915-C927.
PubMed
CAS
Google Scholar
Cheung WL, Turner FB, Krishnamoorthy T, Wolner B, Ahn SH, Foley M, Dorsey JA, Peterson CL, Berger SL, Allis CD: Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr Biol. 2005, 15: 656-660.
PubMed
CAS
Google Scholar
Knippschild U, Gocht A, Wolff S, Huber N, Lohler J, Stoter M: The casein kinase I family: participation in multiple cellular processes in eukaryotes. Cell Signal. 2005, 17: 675-689.
PubMed
CAS
Google Scholar
Gal TZ, Glazer I, Koltai H: Differential gene expression during desiccation stress in the insect-killing nematode Steinernema feltiae IS-6. J Parasitol. 2003, 89: 761-766.
PubMed
Google Scholar
Paradis S, Ruvkun G: Caenorhabditis elegans Akt/PKB transduces insulin receptor-like signals from AGE-1 PI3 kinase to the DAF-16 transcription factor. Genes Dev. 1998, 12: 2488-2498.
PubMed
CAS
PubMed Central
Google Scholar
Padmanabhan S, Mukhopadhyay A, Narasimhan SD, Tesz G, Czech MP, Tissenbaum HA: A PP2A regulatory subunit regulates C. elegans Insulin/IGF-1 signaling by modulating AKT-1 phosphorylation. Cell. 2009, 136: 939-951.
PubMed
CAS
PubMed Central
Google Scholar
Merida I, Avila-Flores A, Merino E: Diacylglycerol kinases: at the hub of cell signalling. Biochem J. 2008, 409: 1-18.
PubMed
CAS
Google Scholar
Arisz SA, Testerink C, Munnik T: Plant PA signaling via diacylglycerol kinase. Biochim Biophys Acta Mol Cell Biol Lipids. 2009, 1791: 869-875.
CAS
Google Scholar
Sedding DG: FoxO transcription factors in oxidative stress response and ageing--a new fork on the way to longevity?. Biol Chem. 2008, 389: 279-283.
PubMed
CAS
Google Scholar
Smith GR, Shanley DP: Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways. PLoS One. 2010, 5 (6): e11092-
PubMed
PubMed Central
Google Scholar
Kirienko NV, Fay DS: SLR-2 and JMJC-1 regulate an evolutionarily conserved stress-response network. EMBO J. 2010, 29: 727-739.
PubMed
CAS
PubMed Central
Google Scholar
Lildballe DL, Pedersen DS, Kalamajka R, Emmersen J, Houben A, Grasser KD: The expression level of the chromatin-associated HMGB1 protein influences growth, stress tolerance, and transcriptome in Arabidopsis. J Mol Biol. 2008, 384: 9-21.
PubMed
CAS
Google Scholar
Kranner I, Birtic S: A modulating role for antioxidants in desiccation tolerance. Integr Comp Biol. 2005, 45: 734-740.
PubMed
CAS
Google Scholar
Franca MB, Panek AD, Eleutherio ECA: Oxidative stress and its effects during dehydration. Comp Biochem Physiol A Mol Integr Physiol. 2007, 146: 621-631.
PubMed
CAS
Google Scholar
Wood ZA, Schroder E, Harris JR, Poole LB: Structure, mechanism and regulation of peroxiredoxins. Trends Biochem Sci. 2003, 28: 32-40.
PubMed
CAS
Google Scholar
Hayes JD, Flanagan JU, Jowsey IR: Glutathione transferases. Annu Rev Pharmacol Toxicol. 2005, 45: 51-88.
PubMed
CAS
Google Scholar
Corona M, Robinson GE: Genes of the antioxidant system of the honey bee: annotation and phylogeny. Insect Mol Biol. 2006, 15: 687-701.
PubMed
CAS
PubMed Central
Google Scholar
Gallogly MM, Mieyal JJ: Mechanisms of reversible protein glutathionylation in redox signaling and oxidative stress. Curr Opin Pharmacol. 2007, 7: 381-391.
PubMed
CAS
Google Scholar
Meyer Y, Buchanan BB, Vignols F, Reichheld JP: Thioredoxins and gutaredoxins: unifying elements in redox biology. Annu Rev Genet. 2009, 43: 335-367.
PubMed
CAS
Google Scholar
Holmgren A: Thioredoxin and glutaredoxin systems. J Biol Chem. 1989, 264: 13963-13966.
PubMed
CAS
Google Scholar
Chang Q, Petrash JM: Disruption of aldo-keto reductase genes leads to elevated markers of oxidative stress and inositol auxotrophy in Saccharomyces cerevisiae. Biochim Biophys Acta Mol Cell Res. 2008, 1783: 237-245.
CAS
Google Scholar
Malik AI, Storey KB: Activation of antioxidant defense during dehydration stress in the African clawed frog. Gene. 2009, 442: 99-107.
PubMed
CAS
Google Scholar
Lee SM, Koh HJ, Park DC, Song BJ, Huh TL, Park JW: Cytosolic NADP(+)-dependent isocitrate dehydrogenase status modulates oxidative damage to cells. Free Radic Biol Med. 2002, 32: 1185-1196.
PubMed
CAS
Google Scholar
Leterrier M, Del Rio LA, Corpas FJ: Cytosolic NADP-isocitrate dehydrogenase of pea plants: genomic clone characterization and functional analysis under abiotic stress conditions. Free Radic Res. 2007, 41: 191-199.
PubMed
CAS
Google Scholar
Adhikari BN, Wall DH, Adams BJ: Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags. BMC Genomics. 2009, 10: 69-
PubMed
PubMed Central
Google Scholar
Hundertmark M, Hincha DK: LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genomics. 2008, 9: 22-
Google Scholar
Bies-Ethève N, Gaubier-Comella P, Debures A, Lasserre E, Jobet E, Raynal M, Cooke R, Delseny M: Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol Biol. 2008, 67: 107-124.
PubMed
Google Scholar
Tunnacliffe A, Wise MJ: The continuing conundrum of the LEA proteins. Naturwissenschaften. 2007, 94: 791-812.
PubMed
CAS
Google Scholar
Sharon MA, Kozarova A, Clegg JS, Vacratsis PO, Warner AH: Characterization of a group 1 late embryogenesis abundant protein in encysted embryos of the brine shrimp Artemia franciscana. Biochem Cell Biol. 2009, 87: 415-430.
PubMed
CAS
Google Scholar
Forster F, Liang CG, Shkumatov A, Beisser D, Engelmann JC, Schnolzer M, Frohme M, Muller T, Schill RO, Dandekar T: Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC Genomics. 2009, 10: 469-
PubMed
PubMed Central
Google Scholar
Dure L: A repeating 11-mer amino-acid motif and plant desiccation. Plant J. 1993, 3: 363-369.
PubMed
CAS
Google Scholar
Browne JA, Dolan KM, Tyson T, Goyal K, Tunnacliffe A, Burnell AM: Dehydration-specific induction of hydrophilic protein genes in the anhydrobiotic nematode Aphelenchus avenae. Eukaryot Cell. 2004, 3: 966-975.
PubMed
CAS
PubMed Central
Google Scholar
Dosztanyi Z, Csizmok V, Tompa P, Simon I: IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics. 2005, 21: 3433-3434.
PubMed
CAS
Google Scholar
Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982, 157: 105-132.
PubMed
CAS
Google Scholar
Hunault G, Jaspard E: LEAPdb: a database for the late embryogenesis abundant proteins. BMC Genomics. 2010, 11: 9-
Google Scholar
Hogg JS, Hu FZ, Janto B, Boissy R, Hayes J, Keefe R, Post JC, Ehrlich GD: Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol. 2007, 8: R103-
PubMed
PubMed Central
Google Scholar
Morimoto RI: Proteotoxic stress and inducible chaperone networks in neurodegenerative disease and aging. Genes Dev. 2008, 22: 1427-1438.
PubMed
CAS
PubMed Central
Google Scholar
Richter K, Haslbeck M, Buchner J: The heat shock response: life on the verge of death. Mol Cell. 2010, 40: 253-266.
PubMed
CAS
Google Scholar
Kabani M, Martineau CN: Multiple Hsp70 isoforms in the eukaryotic cytosol: Mere redundancy or functional specificity?. Curr Genomics. 2008, 9: 338-348.
PubMed
CAS
PubMed Central
Google Scholar
Vos MJ, Hageman J, Carra S, Kampinga HH: Structural and functional diversities between members of the human HSPB, HSPH, HSPA, and DNAJ chaperone families. Biochemistry. 2008, 47: 7001-7011.
PubMed
CAS
Google Scholar
Sales K, Brandt W, Rumbak E, Lindsey G: The LEA-like protein HSP 12 in Saccharomyces cerevisiae has a plasma membrane location and protects membranes against desiccation and ethanol-induced stress. Biochim Biophys Acta Biomembr. 2000, 1463: 267-278.
CAS
Google Scholar
Jonsson KI, Schill RO: Induction of Hsp70 by desiccation, ionising radiation and heat-shock in the eutardigrade Richtersius coronifer. Comp Biochem Physiol B Biochem Mol Biol. 2007, 146: 456-460.
PubMed
Google Scholar
Cho EK, Choi YJ: A nuclear-localized HSP70 confers thermoprotective activity and drought-stress tolerance on plants. Biotechnol Lett. 2009, 31: 597-606.
PubMed
CAS
Google Scholar
Hu XL, Liu RX, Li YH, Wang W, Tai FJ, Xue RL, Li CH: Heat shock protein 70 regulates the abscisic acid-induced antioxidant response of maize to combined drought and heat stress. Plant Growth Regulation. 2010, 60: 225-235.
CAS
Google Scholar
Stengel F, Baldwin AJ, Painter AJ, Jaya N, Basha E, Kay LE, Vierling E, Robinson CV, Benesch JLP: Quaternary dynamics and plasticity underlie small heat shock protein chaperone function. Proc Natl Acad Sci USA. 2010, 107: 2007-2012.
PubMed
CAS
PubMed Central
Google Scholar
Eyles SJ, Gierasch LM: Nature's molecular sponges: Small heat shock proteins grow into their chaperone roles. Proc Natl Acad Sci USA. 2010, 107: 2727-2728.
PubMed
CAS
PubMed Central
Google Scholar
Liang P, Amons R, MacRae TH, Clegg JS: Purification, structure and in vitro molecular-chaperone activity of Artemia p26, a small heat-shock/alpha-crystallin protein. Eur J Biochem. 1997, 243: 225-232.
PubMed
CAS
Google Scholar
Sun Y, Bojikova-Fournier S, MacRae TH: Structural and functional roles for beta-strand 7 in the alpha-crystallin domain of p26, a polydisperse small heat shock protein from Artemia franciscana. FEBS J. 2006, 273: 1020-1034.
PubMed
CAS
Google Scholar
Schroder M: Endoplasmic reticulum stress responses. Cell Mol Life Sci. 2008, 65: 862-894.
PubMed
CAS
Google Scholar
Winter AD, McCormack G, Page AP: Protein disulfide isomerase activity is essential for viability and extracellular matrix formation in the nematode Caenorhabditis elegans. Dev Biol. 2007, 308: 449-461.
PubMed
CAS
Google Scholar
Karala AR, Psarrakos P, Ruddock LW, Klappa P: Protein disulfide isomerases from C. elegans are equally efficient at thiol-disulfide exchange in simple peptide-based systems but show differences in reactivity towards protein substrates. Antioxid Redox Signal. 2007, 9: 1815-1823.
PubMed
CAS
Google Scholar
Oda Y, Okada T, Yoshida H, Kaufman RJ, Nagata K, Mori K: Derlin-2 and Derlin-3 are regulated by the mammalian unfolded protein response and are required for ER-associated degradation. J Cell Biol. 2006, 172: 383-393.
PubMed
CAS
PubMed Central
Google Scholar
Lu B, Gong ZH, Wang J, Zhang JH, Liang JS: Microtubule dynamics in relation to osmotic stress-induced ABA accumulation in Zea mays roots. J Exp Bot. 2007, 58: 2565-2572.
PubMed
Google Scholar
Bagniewska-Zadworna A: The root microtubule cytoskeleton and cell cycle analysis through desiccation of Brassica napus seedlings. Protoplasma. 2008, 233: 177-185.
PubMed
Google Scholar
Kubota H: Quality control against misfolded proteins in the cytosol: a network for cell survival. J Biochem. 2009, 146: 609-616.
PubMed
CAS
Google Scholar
Salomons FA, Menendez-Benito V, Bottcher C, McCray BA, Taylor JP, Dantuma NP: Selective accumulation of aggregation-prone proteasome substrates in response to proteotoxic stress. Mol Cell Biol. 2009, 29: 1774-1785.
PubMed
CAS
PubMed Central
Google Scholar
Lamark T, Johansen T: Autophagy: links with the proteasome. Curr Opin Cell Biol. 2010, 22: 192-198.
PubMed
CAS
Google Scholar
Choe KP, Strange K: Genome-wide RNAi screen and in viv protein aggregation reporters identify degradation of damaged proteins as an essential hypertonic stress response. Am J Physiol Cell Physiol. 2008, 295: C1488-C1498.
PubMed
CAS
PubMed Central
Google Scholar
Kovacs AL, Zhang H: Role of autophagy in Caenorhabditis elegans. FEBS Lett. 2010, 584: 1335-1341.
PubMed
CAS
Google Scholar
Barrett J, Butterworth PE: DNA stability in the anabiotic fourth-stage juveniles of Ditylenchus dipsaci (Nematoda). Ann Appl Biol. 1985, 106: 121-124.
CAS
Google Scholar
Gusev O, Nakahara Y, Vanyagina V, Malutina L, Cornette R, Sakashita T, Hamada N, Kikawada T, Kobayashi Y, Okuda T: Anhydrobiosis-associated nuclear DNA damage and repair in the sleeping chironomid: linkage with radioresistance. PLoS One. 2010, 5 (11): e14008-
PubMed
PubMed Central
Google Scholar
Neumann S, Reuner A, Brummer F, Schill RO: DNA damage in storage cells of anhydrobiotic tardigrades. Comp Biochem Physiol A Mol Integr Physiol. 2009, 153: 425-429.
PubMed
Google Scholar
Rebecchi L, Cesari M, Altiero T, Frigieri A, Guidetti R: Survival and DNA degradation in anhydrobiotic tardigrades. J Exp Biol. 2009, 212: 4033-4039.
PubMed
CAS
Google Scholar
Mattimore V, Battista JR: Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J Bacteriol. 1996, 178: 633-637.
PubMed
CAS
PubMed Central
Google Scholar
Ngo JK, Davies KJA: Mitochondrial Lon protease is a human stress protein. Free Radic Biol Med. 2009, 46: 1042-1048.
PubMed
CAS
PubMed Central
Google Scholar
van West P, Kamoun S, van't Klooster JM, Govers F: Ric1, a Phytophthora infestans gene with homology to stress-induced genes. Curr Genet. 1999, 36: 310-315.
PubMed
CAS
Google Scholar
Navarre C, Goffeau A: Membrane hyperpolarization and salt sensitivity induced by deletion of PMP3, a highly conserved small protein of yeast plasma membrane. EMBO J. 2000, 19: 2515-2524.
PubMed
CAS
PubMed Central
Google Scholar
Rasmussen M, Alexander RT, Darborg BV, Mobjerg N, Hoffmann EK, Kapus A, Pedersen SF: Osmotic cell shrinkage activates ezrin/radixin/moesin (ERM) proteins: activation mechanisms and physiological implications. Am J Physiol Cell Physiol. 2008, 294: C197-C212.
PubMed
CAS
Google Scholar
Sato N, Funayama N, Nagafuchi A, Yonemura S, Tsukita S: A gene family consisting of ezrin, radixin and moesin--its specific localization at actin filament plasma-membrane association sites. J Cell Sci. 1992, 103: 131-143.
PubMed
CAS
Google Scholar
Liu JJ, Sturrock R, Ekramoddoullah AKM: The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function. Plant Cell Rep. 2010, 29: 419-436.
PubMed
CAS
Google Scholar
Jin Y, Wang M, Fu JJ, Xuan N, Zhu Y, Lian Y, Jia ZW, Zheng J, Wang GY: Phylogenetic and expression analysis of ZnF-AN1 genes in plants. Genomics. 2007, 90: 265-275.
PubMed
CAS
Google Scholar
Haegeman A, Jacob J, Vanholme B, Kyndt T, Mitreva M, Gheysen G: Expressed sequence tags of the peanut pod nematode Ditylenchus africanus: The first transcriptome analysis of an Anguinid nematode. Mol Biochem Parasitol. 2009, 167: 32-40.
PubMed
CAS
PubMed Central
Google Scholar
Enright AJ, Van Dongen S, Ouzounis CA: An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 2002, 30: 1575-1584.
PubMed
CAS
PubMed Central
Google Scholar
Jacob J, Vanholme B, Haegeman A, Gheysen G: Four transthyretin-like genes of the migratory plant-parasitic nematode Radopholus similis: members of an extensive nematode-specific family. Gene. 2007, 402: 9-19.
PubMed
CAS
Google Scholar
Wang XC, Li WD, Zhao DF, Liu B, Shi Y, Chen BH, Yang HW, Guo PF, Geng X, Shang ZH, et al: Caenorhabditis elegans transthyretin-like protein TTR-52 mediates recognition of apoptotic cells by the CED-1 phagocyte receptor. Nat Cell Biol. 2010, 12: 655-669.
PubMed
PubMed Central
Google Scholar
Dyson HJ, Wright PE: Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol. 2005, 6: 197-208.
PubMed
CAS
Google Scholar
Garay-Arroyo A, Colmenero-Flores JM, Garciarrubio A, Covarrubias AA: Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J Biol Chem. 2000, 275: 5668-5674.
PubMed
CAS
Google Scholar
Tompa P: The interplay between structure and function in intrinsically unstructured proteins. FEBS Lett. 2005, 579: 3346-3354.
PubMed
CAS
Google Scholar
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradovic Z: Intrinsic disorder and protein function. Biochemistry. 2002, 41: 6573-6582.
PubMed
CAS
Google Scholar
Goyal K, Tisi L, Basran A, Browne J, Burnell A, Zurdo J, Tunnacliffe A: Transition from natively unfolded to folded state induced by desiccation in an anhydrobiotic nematode protein. J Biol Chem. 2003, 278: 12977-12984.
PubMed
CAS
Google Scholar
Hand SC, Menze MA, Toner M, Boswell L, Moore D: LEA proteins during water stress: not just for plants anymore. Annu Rev Physiol. 2011, 73: 115-134.
PubMed
CAS
Google Scholar
Andres-Mateos E, Perier C, Zhang L, Blanchard-Fillion B, Greco TM, Thomas B, Ko HS, Sasaki M, Ischiropoulos H, Przedborski S, et al: DJ-1 gene deletion reveals that DJ-1 is an atypical peroxiredoxin-like peroxidase. Proc Natl Acad Sci USA. 2007, 104: 14807-14812.
PubMed
CAS
PubMed Central
Google Scholar
Dubreuil G, Deleury E, Magliano M, Jaouannet M, Abad P, Rosso MN: Peroxiredoxins from the plant parasitic root-knot nematode, Meloidogyne incognita, are required for successful development within the host. Int J Parasitol. 2011, 41: 385-396.
PubMed
CAS
Google Scholar
Aalen RB: Peroxiredoxin antioxidants in seed physiology. Seed Sci Res. 1999, 9: 285-295.
CAS
Google Scholar
Mowla SB, Thomson JA, Farrant JM, Mundree SG: A novel stress-inducible antioxidant enzyme identified from the resurrection plant Xerophyta viscosa Baker. Planta. 2002, 215: 716-726.
PubMed
CAS
Google Scholar
Oliver MJ: Desiccation tolerance in vegetative plant cells. Physiol Plant. 1996, 97: 779-787.
CAS
Google Scholar
Adhikari BN, Wall DH, Adams BJ: Effect of slow desiccation and freezing on gene transcription and stress survival of an Antarctic nematode. J Exp Biol. 2010, 213: 1803-1812.
PubMed
CAS
Google Scholar
Denekamp NY, Reinhardt R, Albrecht MW, Drungowski M, Kube M, Lubzens E: The expression pattern of dormancy-associated genes in multiple life-history stages in the rotifer Brachionus plicatilis. Hydrobiologia. 2011, 662: 51-63.
CAS
Google Scholar
Sambrook J, Russell DW: Molecular Cloning: A Laboratory Manual. 2001, New York: Cold Spring Harbor Laboratory, 3
Google Scholar
Parkinson J, Guiliano DB, Blaxter M: Making sense of EST sequences by CLOBBing them. BMC Bioinforma. 2002, 3: 31-
Google Scholar
Bairoch A: The ENZYME database in 2000. Nucleic Acids Res. 2000, 28: 304-305.
PubMed
CAS
PubMed Central
Google Scholar
Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, Suzek BE, Martin MJ, McGarvey P, Gasteiger E: Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinforma. 2009, 10: 136-
Google Scholar
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M: KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 2007, 35: W182-W185.
PubMed
PubMed Central
Google Scholar
Lottaz C, Iseli C, Jongeneel CV, Bucher P: Modeling sequencing errors by combining Hidden Markov models. Bioinformatics. 2003, 19 (Suppl. 2): ii103-ii112.
PubMed
Google Scholar
Fukunishi Y, Hayashizaki Y: Amino acid translation program for full-length cDNA sequences with frameshift errors. Physiol Genomics. 2001, 5: 81-87.
PubMed
CAS
Google Scholar
Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A: ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003, 31: 3784-3788.
PubMed
CAS
PubMed Central
Google Scholar
Winston PW, Bates DH: Saturated solutions for the control of humidity in biological research. Ecology. 1960, 41: 232-237.
Google Scholar
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